Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

10559983 .. 10567360

Gene Structure 7378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCAGACGGGGCAGAGAGGGAAGCCAAGAAGATCATCATTGACACCGACCCTGGTATCGACGATGCCATGGCCATATTTGTGGCGTTACAGTCCCCGGAAGTGCAAGTGATTGGAATTACTACTATTTATGGCAATGTTTATACCACTCTCGCCACGAGAAATGCCTTGCATTTGTTGGAGGTTGCAGGGAGAACCGATATTCCGGTGGCTGAAGGATCTCACGTCACAATAACTAAAGGTACAAAACTTCGCATTGCTGATTTTGTTCATGGTGTGGATGGACTTGGCAACCAAAATTTTCCCCCACCAAAAGGAAAGCCAATTGAACAGTCGGCAGCAGCTTTTCTGGTTGAACAAGCAAGCCTTTACCCTGGAAAGGTCACTGTGGTAGCATTGGGCCCTCTTACAAATATTGCACTGGCTACTCAACTAGACCCTGCATTTGCAAAGAACATAGGGCAGATTATTCTTCTTGGCGGTGCTTTTGCAGTCAATGGGAATGTAAATCCAGCAGCAGAGGCCAATATCTTTGGGGATCCAGATGCTGCAGATACGGTATTTACATGTGGAGCAGATATTTTGGCTATGGGGATTAATGTGACCCATCAAGTTGTCTTGACAGATGCTGATCGAGAAACGCTGGCAATGTCAAATGGAAAGTTTGCTCAATACTTGTGCAAAATTTTAGATGTGTACTTCTCCTACCATCACGATGCGTATAGCACAAAAGGAGTTTATCTTCATGATCCTGCAGTACTTGTTGCAGCCGTTAATCCTTCACTTTTCACTTACATGGAGGGTGTTGTTAGAGTCCAGACAAATGGCATCACAAGAGGACTCACAATTTTGTACAACAAACAGAAAAGGTTTGGTGAGGTGACGGAGTGGTGTGATAAACCCACAGTGAAGGTAGCAGTGACGGTTGATGCCCCCACAGTTGTGAAATTGGTTATGGAACGGCTCATTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

326

Amino Acids

34.72

Weight (kDa)

5.25

Isoelectric Point (pI)

22.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	12 - 314	6e-89	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	4 cut(s)	226, 533, 546, 743
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	298, 684
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	244, 698, 759, 854
AfiI	CCNNNNNNNGG	2 cut(s)	314, 379
AflIII	ACRYGT	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	329, 356
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	52, 373
AleI	CACNNNNGTG	1 cut(s)	941
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
AlwI	GGATC	4 cut(s)	226, 533, 546, 743
AlwNI	CAGNNNCTG	2 cut(s)	548, 629
AoxI	GGCC	3 cut(s)	72, 400, 522
ApaI	GGGCCC	1 cut(s)	404
ApeKI	GCWGC	5 cut(s)	338, 341, 515, 548, 767
ApoI	RAATTY	2 cut(s)	298, 684
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AseI	ATTAAT	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	400, 401
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	887, 892
BaeGI	GKGCMC	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	40, 73
BalI	TGGCCA	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	157
BbvI	GCAGC	5 cut(s)	350, 353, 527, 535, 779
BccI	CCATC	3 cut(s)	275, 615, 717
BceAI	ACGGC	1 cut(s)	755
BciT130I	CCWGG	2 cut(s)	54, 375
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	549, 753
BisI	GCNGC	5 cut(s)	339, 342, 516, 549, 768
BlsI	GCNGC	5 cut(s)	340, 343, 517, 550, 769
BmcAI	AGTACT	1 cut(s)	759
Bme1390I	CCNGG	3 cut(s)	54, 98, 375
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	400, 401
BmiI	GGNNCC	2 cut(s)	402, 540
BmrFI	CCNGG	3 cut(s)	54, 98, 375
BmsI	GCATC	6 cut(s)	55, 535, 616, 706, 837, 919
BpuMI	CCSGG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	4 cut(s)	52, 69, 96, 373
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 379
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	3 cut(s)	142, 255, 654
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	54, 375
BseDI	CCNNGG	4 cut(s)	52, 69, 96, 373
BseGI	GGATG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	314, 379
BseMI	GCAATG	3 cut(s)	142, 255, 654
BseNI	ACTGG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	5 cut(s)	350, 353, 527, 535, 779
BshFI	GGCC	3 cut(s)	74, 402, 524
BsiSI	CCGG	2 cut(s)	98, 206
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	314, 379
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	74, 402, 524
Bsp120I	GGGCCC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	5 cut(s)	33, 218, 538, 631, 748
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	3 cut(s)	74, 402, 524
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	402, 540
BspMAI	CTGCAG	2 cut(s)	553, 757
BspPI	GGATC	4 cut(s)	226, 533, 546, 743
BsrDI	GCAATG	3 cut(s)	142, 255, 654
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	4 cut(s)	52, 69, 96, 373
BssMI	GATC	5 cut(s)	33, 218, 538, 631, 748
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	54, 375
Bst4CI	ACNGT	7 cut(s)	93, 333, 388, 559, 907, 925, 940
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	364, 645
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	5 cut(s)	36, 221, 541, 634, 751
BstMBI	GATC	5 cut(s)	33, 218, 538, 631, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 521
BstNI	CCWGG	2 cut(s)	54, 375
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	3 cut(s)	52, 96, 373
BstSFI	CTRYAG	2 cut(s)	549, 753
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	5 cut(s)	350, 353, 527, 535, 779
BstX2I	RGATCY	2 cut(s)	218, 538
BstXI	CCANNNNNNTGG	2 cut(s)	82, 824
BstYI	RGATCY	2 cut(s)	218, 538
BsuRI	GGCC	3 cut(s)	74, 402, 524
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	4 cut(s)	384, 419, 912, 924
Cac8I	GCNNGC	2 cut(s)	364, 645
CaiI	CAGNNNCTG	2 cut(s)	548, 629
CciI	TCATGA	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	400, 401
Csp6I	GTAC	4 cut(s)	243, 697, 758, 853
CviAII	CATG	5 cut(s)	70, 272, 567, 746, 796
CviQI	GTAC	4 cut(s)	243, 697, 758, 853
DpnI	GATC	5 cut(s)	35, 220, 540, 633, 750
DpnII	GATC	5 cut(s)	33, 218, 538, 631, 748
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	52, 373
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	5 cut(s)	73, 275, 570, 749, 799
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	69, 271, 566, 745, 795
Fnu4HI	GCNGC	5 cut(s)	339, 342, 516, 549, 768
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	5 cut(s)	339, 342, 516, 549, 768
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	5 cut(s)	339, 342, 516, 549, 768
HaeIII	GGCC	3 cut(s)	74, 402, 524
HapII	CCGG	2 cut(s)	98, 206
Hin1II	CATG	5 cut(s)	73, 275, 570, 749, 799
HinfI	GANTC	3 cut(s)	813, 840, 971
HpaII	CCGG	2 cut(s)	98, 206
HphI	GGTGA	2 cut(s)	887, 892
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188III	TCNNGA	7 cut(s)	542, 619, 635, 713, 746, 817, 975
Hpy8I	GTNNAC	1 cut(s)	697
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	209, 789, 904
HpyCH4III	ACNGT	7 cut(s)	93, 333, 388, 559, 907, 925, 940
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 521
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	73, 275, 570, 749, 799
Kzo9I	GATC	5 cut(s)	33, 218, 538, 631, 748
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	5 cut(s)	350, 353, 527, 535, 779
LweI	GCATC	6 cut(s)	55, 535, 616, 706, 837, 919
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	6 cut(s)	87, 226, 382, 601, 880, 919
MalI	GATC	5 cut(s)	35, 220, 540, 633, 750
MboI	GATC	5 cut(s)	33, 218, 538, 631, 748
MboII	GAAGA	3 cut(s)	43, 464, 734
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	2 cut(s)	218, 538
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	6 cut(s)	117, 298, 324, 684, 846, 947
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	822, 834
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	12, 175, 414, 514, 793, 830, 871
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	2 cut(s)	597, 774
MslI	CAYNNNNRTG	4 cut(s)	80, 714, 794, 941
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	98, 206
MspR9I	CCNGG	3 cut(s)	54, 98, 375
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	54, 375
MwoI	GCNNNNNNNGC	2 cut(s)	11, 521
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	5 cut(s)	33, 218, 538, 631, 748
NlaIII	CATG	5 cut(s)	73, 275, 570, 749, 799
NlaIV	GGNNCC	2 cut(s)	402, 540
NmuCI	GTSAC	5 cut(s)	226, 382, 601, 880, 919
NspI	RCATGY	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	941
PagI	TCATGA	1 cut(s)	745
PciI	ACATGT	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	340, 343, 517, 550, 769
PleI	GAGTC	2 cut(s)	821, 834
PpsI	GAGTC	2 cut(s)	821, 834
PscI	ACATGT	1 cut(s)	566
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	52, 373
PspGI	CCWGG	2 cut(s)	52, 373
PspN4I	GGNNCC	2 cut(s)	402, 540
PspOMI	GGGCCC	1 cut(s)	400
PspPI	GGNCC	2 cut(s)	400, 401
PstI	CTGCAG	2 cut(s)	553, 757
PstNI	CAGNNNCTG	2 cut(s)	548, 629
PsuI	RGATCY	2 cut(s)	218, 538
RsaI	GTAC	4 cut(s)	244, 698, 759, 854
RsaNI	GTAC	4 cut(s)	243, 697, 758, 853
RseI	CAYNNNNRTG	4 cut(s)	80, 714, 794, 941
SaqAI	TTAA	2 cut(s)	597, 774
SatI	GCNGC	5 cut(s)	339, 342, 516, 549, 768
Sau3AI	GATC	5 cut(s)	33, 218, 538, 631, 748
Sau96I	GGNCC	2 cut(s)	400, 401
ScaI	AGTACT	1 cut(s)	759
SchI	GAGTC	2 cut(s)	822, 834
ScrFI	CCNGG	3 cut(s)	54, 98, 375
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	8 cut(s)	186, 228, 244, 346, 384, 872, 882, 915
SfaNI	GCATC	6 cut(s)	55, 535, 616, 706, 837, 919
SfcI	CTRYAG	2 cut(s)	549, 753
SmiMI	CAYNNNNRTG	4 cut(s)	80, 714, 794, 941
Sse9I	AATT	6 cut(s)	117, 298, 324, 684, 846, 947
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	3 cut(s)	52, 96, 373
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	7 cut(s)	93, 333, 388, 559, 907, 925, 940
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	60, 634
TasI	AATT	6 cut(s)	117, 298, 324, 684, 846, 947
TatI	WGTACW	3 cut(s)	696, 757, 852
Tru1I	TTAA	2 cut(s)	597, 774
Tru9I	TTAA	2 cut(s)	597, 774
TscAI	CASTG	4 cut(s)	391, 426, 912, 924
TseFI	GTSAC	5 cut(s)	226, 382, 601, 880, 919
TseI	GCWGC	5 cut(s)	338, 341, 515, 548, 767
Tsp45I	GTSAC	5 cut(s)	226, 382, 601, 880, 919
TspDTI	ATGAA	2 cut(s)	260, 734
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	4 cut(s)	391, 426, 912, 924
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	298, 684
XceI	RCATGY	1 cut(s)	570
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.