Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Reverse (-)

185589 .. 188781

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG002700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCATGCAGATGATGCCATGGCCATATTCGTGGCATTGAAGTCGCCAGAGGTGGAAGTGATTGGACTGACAACTATCTATGGGAATGTTTATACAACTCTGGCCACGAGAAATGCCTTGCATTTGTTGGAGTTTGCAGGGAGAACTGATATTCCCGTGGCTGAAGGATCCCATGTCACAATAACTCAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTACGGATGGACTTGGAAACCAAAACTTCCCTCCACCAATTGGAAAGCCAATTGAACAGTCTGCAGCAGCTTTTCTGGTGGAGCAAGCAAACCTTTACCCTGGAAAAGTCACTGTGGTAGCATTAGGCCCACTTACAAATATTGCACTGGCTATACAACTAGATCCTGCATTTGCAAAGAACATTGGGCAGATTGTTCTTCTTGGTGGCGCTTTTGCAGTCAATGGGAATGTAAATCCAGCAGCAGAGGCCAATATATTTGGAGATCCAGATGCTGCAGATATAGTATTCACAAGTGGAGCAGATGTTTTGGCCGTGGGCCTAAATGTTACCCATCAAGTTGTCTTGACAGATGCTGATCGGGACAAGTTGACCAAGTCAAATGGAAAATTTGCTCAGTACCTGTGCAAAATTTTAGATGTGTACTTCTCTTACCATCATGATGCCTATAGCACGAAAGGAGTTTACCTTCATGATCCTACAGCCCTTCTGGCAGCTGTTAATCCTTCACTTCTAACTTACACAGAGGGTGTTGTTAGAGTTCAGACAAGTGGCATCACAAGAGGGCTCACAACTTTGTATAACAAACAGAAAAGGTTCGGTGAAGTCACAGAATGGTGTGATAAACCCACGGCGAAGGTAGCAGTTACTGTTGATGCTCCCACAGTGGTCAACTTGGTCATGGAACGGCTGATGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

308

Amino Acids

32.86

Weight (kDa)

5.43

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	3 - 297	6.3e-85	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	263
AclWI	GGATC	5 cut(s)	162, 175, 380, 482, 692
AcoI	YGGCCR	3 cut(s)	21, 102, 534
AcsI	RAATTY	2 cut(s)	611, 633
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	4 cut(s)	193, 226, 623, 647
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	40, 278
AjnI	CCWGG	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	136, 168
AluBI	AGCT	2 cut(s)	293, 719
AluI	AGCT	2 cut(s)	293, 719
AlwI	GGATC	5 cut(s)	162, 175, 380, 482, 692
AlwNI	CAGNNNCTG	4 cut(s)	497, 578, 625, 872
AoxI	GGCC	6 cut(s)	21, 102, 349, 471, 534, 541
ApeKI	GCWGC	5 cut(s)	287, 290, 464, 497, 716
ApoI	RAATTY	2 cut(s)	611, 633
Asp700I	GAANNNNTTC	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	350, 541
AsuHPI	GGTGA	1 cut(s)	836
BalI	TGGCCA	2 cut(s)	23, 104
BamHI	GGATCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	792
BauI	CACGAG	1 cut(s)	106
BbvI	GCAGC	5 cut(s)	299, 302, 476, 484, 728
BccI	CCATC	4 cut(s)	224, 564, 666, 910
BceAI	ACGGC	2 cut(s)	521, 870
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	4 cut(s)	285, 498, 670, 702
BfoI	RGCGCY	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	5 cut(s)	288, 291, 465, 498, 717
BlsI	GCNGC	5 cut(s)	289, 292, 466, 499, 718
Bme1390I	CCNGG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	350, 541
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	6 cut(s)	4, 484, 565, 655, 786, 868
BpuEI	CTTGAG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	5 cut(s)	18, 156, 322, 537, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	5 cut(s)	18, 156, 322, 537, 852
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	5 cut(s)	299, 302, 476, 484, 728
BshFI	GGCC	6 cut(s)	23, 104, 351, 473, 536, 543
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	6 cut(s)	23, 104, 351, 473, 536, 543
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	5 cut(s)	167, 385, 487, 580, 697
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	6 cut(s)	23, 104, 351, 473, 536, 543
BspCNI	CTCAG	1 cut(s)	631
BspHI	TCATGA	2 cut(s)	661, 694
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	2 cut(s)	289, 502
BspPI	GGATC	5 cut(s)	162, 175, 380, 482, 692
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	5 cut(s)	18, 156, 322, 537, 852
BssMI	GATC	5 cut(s)	167, 385, 487, 580, 697
BssSI	CACGAG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	4 cut(s)	282, 337, 874, 889
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	6, 309
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	4 cut(s)	18, 156, 537, 852
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	5 cut(s)	170, 388, 490, 583, 700
BstMBI	GATC	5 cut(s)	167, 385, 487, 580, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 470, 713, 863
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	4 cut(s)	285, 498, 670, 702
BstV1I	GCAGC	5 cut(s)	299, 302, 476, 484, 728
BstX2I	RGATCY	3 cut(s)	167, 385, 487
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	3 cut(s)	167, 385, 487
BsuRI	GGCC	6 cut(s)	23, 104, 351, 473, 536, 543
BtgI	CCRYGG	4 cut(s)	18, 156, 537, 852
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	3 cut(s)	333, 368, 894
Cac8I	GCNNGC	2 cut(s)	6, 309
CaiI	CAGNNNCTG	4 cut(s)	497, 578, 625, 872
CciI	TCATGA	2 cut(s)	661, 694
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	350, 541
Csp6I	GTAC	4 cut(s)	192, 225, 622, 646
CviAII	CATG	7 cut(s)	5, 19, 173, 221, 662, 695, 904
CviQI	GTAC	4 cut(s)	192, 225, 622, 646
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	5 cut(s)	169, 387, 489, 582, 699
DpnII	GATC	5 cut(s)	167, 385, 487, 580, 697
EaeI	YGGCCR	3 cut(s)	21, 102, 534
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	792
Eco57I	CTGAAG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	7 cut(s)	8, 22, 176, 224, 665, 698, 907
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	7 cut(s)	4, 18, 172, 220, 661, 694, 903
Fnu4HI	GCNGC	5 cut(s)	288, 291, 465, 498, 717
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	5 cut(s)	288, 291, 465, 498, 717
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	5 cut(s)	288, 291, 465, 498, 717
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	6 cut(s)	23, 104, 351, 473, 536, 543
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	7 cut(s)	8, 22, 176, 224, 665, 698, 907
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	2 cut(s)	594, 895
HindII	GTYRAC	2 cut(s)	594, 895
HinfI	GANTC	1 cut(s)	920
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	4 cut(s)	594, 646, 688, 895
Hpy188I	TCNGA	1 cut(s)	768
Hpy188III	TCNNGA	6 cut(s)	491, 568, 584, 662, 695, 924
Hpy8I	GTNNAC	4 cut(s)	594, 646, 688, 895
HpyAV	CCTTC	5 cut(s)	158, 701, 719, 738, 853
HpyCH4III	ACNGT	4 cut(s)	282, 337, 874, 889
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 470, 713, 863
HpyF3I	CTNAG	1 cut(s)	618
Hsp92II	CATG	7 cut(s)	8, 22, 176, 224, 665, 698, 907
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	5 cut(s)	167, 385, 487, 580, 697
LmnI	GCTCC	3 cut(s)	304, 521, 886
Lsp1109I	GCAGC	5 cut(s)	299, 302, 476, 484, 728
LweI	GCATC	6 cut(s)	4, 484, 565, 655, 786, 868
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	5 cut(s)	175, 331, 550, 829, 868
MalI	GATC	5 cut(s)	169, 387, 489, 582, 699
MboI	GATC	5 cut(s)	167, 385, 487, 580, 697
MboII	GAAGA	1 cut(s)	413
MfeI	CAATTG	2 cut(s)	261, 273
MflI	RGATCY	3 cut(s)	167, 385, 487
MhlI	GDGCHC	1 cut(s)	792
MlsI	TGGCCA	2 cut(s)	23, 104
MluCI	AATT	4 cut(s)	261, 273, 611, 633
MluNI	TGGCCA	2 cut(s)	23, 104
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	43, 264, 463, 742, 779
Mox20I	TGGCCA	2 cut(s)	23, 104
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	818
MscI	TGGCCA	2 cut(s)	23, 104
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	3 cut(s)	9, 29, 663
Msp20I	TGGCCA	2 cut(s)	23, 104
MspA1I	CMGCKG	1 cut(s)	719
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	2 cut(s)	261, 273
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	14, 470, 713, 863
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	5 cut(s)	167, 385, 487, 580, 697
NlaIII	CATG	7 cut(s)	8, 22, 176, 224, 665, 698, 907
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	3 cut(s)	175, 331, 829
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	2 cut(s)	661, 694
PdmI	GAANNNNTTC	1 cut(s)	818
PflFI	GACNNNGTC	1 cut(s)	598
PflMI	CCANNNNNTGG	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	289, 292, 466, 499, 718
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	350, 541
PstI	CTGCAG	2 cut(s)	289, 502
PstNI	CAGNNNCTG	4 cut(s)	497, 578, 625, 872
PsuI	RGATCY	3 cut(s)	167, 385, 487
PsyI	GACNNNGTC	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	4 cut(s)	193, 226, 623, 647
RsaNI	GTAC	4 cut(s)	192, 225, 622, 646
RseI	CAYNNNNRTG	3 cut(s)	9, 29, 663
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	5 cut(s)	288, 291, 465, 498, 717
Sau3AI	GATC	5 cut(s)	167, 385, 487, 580, 697
Sau96I	GGNCC	2 cut(s)	350, 541
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	792
SetI	ASST	9 cut(s)	54, 193, 295, 318, 627, 693, 721, 821, 864
SfaNI	GCATC	6 cut(s)	4, 484, 565, 655, 786, 868
SfcI	CTRYAG	4 cut(s)	285, 498, 670, 702
SmiMI	CAYNNNNRTG	3 cut(s)	9, 29, 663
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	4 cut(s)	261, 273, 611, 633
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	4 cut(s)	282, 337, 874, 889
TasI	AATT	4 cut(s)	261, 273, 611, 633
TatI	WGTACW	1 cut(s)	645
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	3 cut(s)	340, 375, 894
TseFI	GTSAC	3 cut(s)	175, 331, 829
TseI	GCWGC	5 cut(s)	287, 290, 464, 497, 716
Tsp45I	GTSAC	3 cut(s)	175, 331, 829
TspDTI	ATGAA	2 cut(s)	209, 683
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	3 cut(s)	340, 375, 894
Tth111I	GACNNNGTC	1 cut(s)	598
Van91I	CCANNNNNTGG	1 cut(s)	263
XapI	RAATTY	2 cut(s)	611, 633
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.