Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Reverse (-)

114137 .. 117491

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAGTGACTGACCCCAAGAAGATCATCATCGACACTGATCCTGGGATCGATGATGCCATGGCCATATTTGTGGCATTGAAGTCGCCTGAGGTGGAAGTGATTGGACTCACAACTATATATGGGAATGTTTATACAACTCTGGCCACAAGAAATGCCTTGCATTTGTTGGAGTTTGCAGGGAGAACTGATATTCCTGTGGCTGAAGGATCCCATGTCACAATAACTCAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTACGGATGGACTTGGAAACCAAAACTTCCCTCCACCAAAAGGAAAGCCAATTGAACAGTCTGCAGCAGCTTTTCTGGTGGAACAAGCAAACCTTCACCCTGGAAAAGTCACTCTGGTAGCATTGGGCCCACTTACAAATATTGCACTGGCTATACAACTAGATCCTGCATTTGCAAAGAACATTGGGCAGATTGTTCTTCTTGGTGGCGCTTTTGCAGTTAATGGGAATGTAAATCCAGCAGCAGAGGCCAACATATTTGGGGACCCAGATGCTGCAGATATTGTATTTACAAGTGGAGCAGATGTTTTGGCCGTGGGCATAAATGTTACCCATCAAGTTGTCTTGACAGATGCTGATCGAGACAAGTTGGCAAAGTCAAATGGAAAATTCGCTCAGTACTTGTGCAAAATTTTAGATGTGTACTTCTCTTACCATCATGATGCGTATAGCACAAAAGGAGTTTACCTTCATGATCCTACAACCCTTCTGGCAGCCGTTAATCCTTCACTTCTAACTTACACAGAGGGTGCTGTTAGAGTCCAGACAAGTGGCATCACAAGAGGGCTCACAATTTTGTATAACAAACAGAAAAACTTTGGTGAGGTGACCGAATGGTGTGATAAACCCACGGTGAAGGTAGCAGTTACAGTTGATGCTCCAACAGTGCTAAACTTGGTCATGGAACGGCTCATGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

323

Amino Acids

34.32

Weight (kDa)

5.32

Isoelectric Point (pI)

13.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	9 - 311	1.7e-92	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	35, 56, 204, 217, 422, 734
AcoI	YGGCCR	3 cut(s)	63, 144, 576
AcsI	RAATTY	2 cut(s)	653, 675
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	235, 268, 665, 689
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	82, 320
AjnI	CCWGG	2 cut(s)	43, 364
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	6 cut(s)	35, 56, 204, 217, 422, 734
AlwNI	CAGNNNCTG	3 cut(s)	11, 539, 620
AoxI	GGCC	5 cut(s)	63, 144, 391, 513, 576
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
ApoI	RAATTY	2 cut(s)	653, 675
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	3 cut(s)	391, 392, 529
AsuHPI	GGTGA	4 cut(s)	353, 878, 883, 910
AvaII	GGWCC	1 cut(s)	529
AxyI	CCTNAGG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	395
BalI	TGGCCA	2 cut(s)	65, 146
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	395, 834
BbvI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BccI	CCATC	3 cut(s)	266, 606, 708
BceAI	ACGGC	2 cut(s)	563, 746
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	2 cut(s)	45, 366
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	327, 540
BfoI	RGCGCY	1 cut(s)	477
BisI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
BlsI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	2 cut(s)	45, 366
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	3 cut(s)	391, 392, 529
BmiI	GGNNCC	4 cut(s)	211, 393, 530, 531
BmrFI	CCNGG	2 cut(s)	45, 366
BmsI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
BpuEI	CTTGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	2 cut(s)	29, 621
BsaJI	CCNNGG	5 cut(s)	44, 60, 364, 579, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	90
Bse8I	GATNNNNATC	2 cut(s)	29, 621
BseBI	CCWGG	2 cut(s)	45, 366
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	44, 60, 364, 579, 894
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	2 cut(s)	29, 621
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	81, 674
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BshFI	GGCC	5 cut(s)	65, 146, 393, 515, 578
BshVI	ATCGAT	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	621
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	5 cut(s)	65, 146, 393, 515, 578
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	395, 834
Bsp143I	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	5 cut(s)	65, 146, 393, 515, 578
BspCNI	CTCAG	2 cut(s)	82, 673
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	2 cut(s)	703, 736
BspLI	GGNNCC	4 cut(s)	211, 393, 530, 531
BspMAI	CTGCAG	2 cut(s)	331, 544
BspPI	GGATC	6 cut(s)	35, 56, 204, 217, 422, 734
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	5 cut(s)	44, 60, 364, 579, 894
BssMI	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	45, 366
Bst4CI	ACNGT	4 cut(s)	324, 898, 916, 931
BstDEI	CTNAG	2 cut(s)	90, 660
BstDSI	CCRYGG	3 cut(s)	60, 579, 894
BstEII	GGTNACC	1 cut(s)	871
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	7 cut(s)	27, 43, 51, 212, 430, 625, 742
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	45, 366
BstPI	GGTNACC	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	43, 364
BstSFI	CTRYAG	2 cut(s)	327, 540
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BstX2I	RGATCY	2 cut(s)	209, 427
BstXI	CCANNNNNNTGG	2 cut(s)	73, 815
BstYI	RGATCY	2 cut(s)	209, 427
Bsu15I	ATCGAT	1 cut(s)	51
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	5 cut(s)	65, 146, 393, 515, 578
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	3 cut(s)	60, 579, 894
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 36, 410, 936
CaiI	CAGNNNCTG	3 cut(s)	11, 539, 620
CciI	TCATGA	2 cut(s)	703, 736
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	391, 392, 529
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	234, 267, 664, 688
CviAII	CATG	7 cut(s)	61, 215, 263, 704, 737, 946, 958
CviQI	GTAC	4 cut(s)	234, 267, 664, 688
DdeI	CTNAG	2 cut(s)	90, 660
DpnI	GATC	7 cut(s)	26, 42, 50, 211, 429, 624, 741
DpnII	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
EaeI	YGGCCR	3 cut(s)	63, 144, 576
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	395, 834
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	529
EcoO65I	GGTNACC	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	43, 364
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	395, 834
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	7 cut(s)	64, 218, 266, 707, 740, 949, 961
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	7 cut(s)	60, 214, 262, 703, 736, 945, 957
Fnu4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	2 cut(s)	395, 834
Fsp4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	5 cut(s)	65, 146, 393, 515, 578
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	7 cut(s)	64, 218, 266, 707, 740, 949, 961
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	3 cut(s)	108, 804, 962
HphI	GGTGA	4 cut(s)	353, 878, 883, 910
Hpy166II	GTNNAC	2 cut(s)	688, 730
Hpy188III	TCNNGA	6 cut(s)	610, 626, 704, 737, 808, 966
Hpy8I	GTNNAC	2 cut(s)	688, 730
HpyAV	CCTTC	6 cut(s)	200, 368, 743, 761, 780, 895
HpyCH4III	ACNGT	4 cut(s)	324, 898, 916, 931
HpyCH4V	TGCA	9 cut(s)	163, 179, 329, 410, 434, 440, 482, 542, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	2 cut(s)	90, 660
Hsp92II	CATG	7 cut(s)	64, 218, 266, 707, 740, 949, 961
HspAI	GCGC	1 cut(s)	474
KflI	GGGWCCC	1 cut(s)	529
Kzo9I	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
LmnI	GCTCC	2 cut(s)	563, 928
Lsp1109I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
LweI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	6 cut(s)	7, 217, 373, 592, 871, 910
MalI	GATC	7 cut(s)	26, 42, 50, 211, 429, 624, 741
MboI	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
MboII	GAAGA	2 cut(s)	34, 455
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	209, 427
MhlI	GDGCHC	2 cut(s)	395, 834
MlsI	TGGCCA	2 cut(s)	65, 146
MluCI	AATT	4 cut(s)	315, 653, 675, 837
MluNI	TGGCCA	2 cut(s)	65, 146
MlyI	GAGTC	3 cut(s)	102, 813, 956
MmeI	TCCRAC	2 cut(s)	150, 950
MnlI	CCTC	6 cut(s)	85, 306, 505, 784, 821, 862
Mox20I	TGGCCA	2 cut(s)	65, 146
MscI	TGGCCA	2 cut(s)	65, 146
MseI	TTAA	2 cut(s)	486, 765
MslI	CAYNNNNRTG	2 cut(s)	71, 705
Msp20I	TGGCCA	2 cut(s)	65, 146
MspR9I	CCNGG	2 cut(s)	45, 366
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	45, 366
MwoI	GCNNNNNNNGC	1 cut(s)	512
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
NlaIII	CATG	7 cut(s)	64, 218, 266, 707, 740, 949, 961
NlaIV	GGNNCC	4 cut(s)	211, 393, 530, 531
NmuCI	GTSAC	4 cut(s)	7, 217, 373, 871
PagI	TCATGA	2 cut(s)	703, 736
PkrI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
PleI	GAGTC	3 cut(s)	102, 812, 956
PpsI	GAGTC	3 cut(s)	102, 812, 956
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	43, 364
PspEI	GGTNACC	1 cut(s)	871
PspGI	CCWGG	2 cut(s)	43, 364
PspN4I	GGNNCC	4 cut(s)	211, 393, 530, 531
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	391, 392, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	2 cut(s)	331, 544
PstNI	CAGNNNCTG	3 cut(s)	11, 539, 620
PsuI	RGATCY	2 cut(s)	209, 427
RsaI	GTAC	4 cut(s)	235, 268, 665, 689
RsaNI	GTAC	4 cut(s)	234, 267, 664, 688
RseI	CAYNNNNRTG	2 cut(s)	71, 705
SaqAI	TTAA	2 cut(s)	486, 765
SatI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
Sau3AI	GATC	7 cut(s)	24, 40, 48, 209, 427, 622, 739
Sau96I	GGNCC	3 cut(s)	391, 392, 529
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	3 cut(s)	102, 813, 956
ScrFI	CCNGG	2 cut(s)	45, 366
SduI	GDGCHC	2 cut(s)	395, 834
SetI	ASST	7 cut(s)	96, 235, 337, 360, 735, 873, 906
SfaNI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
SfcI	CTRYAG	2 cut(s)	327, 540
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	71, 705
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	315, 653, 675, 837
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	43, 364
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	324, 898, 916, 931
TaqI	TCGA	3 cut(s)	33, 51, 625
TaqII	GACCGA	1 cut(s)	890
TasI	AATT	4 cut(s)	315, 653, 675, 837
TatI	WGTACW	2 cut(s)	663, 687
Tru1I	TTAA	2 cut(s)	486, 765
Tru9I	TTAA	2 cut(s)	486, 765
TscAI	CASTG	4 cut(s)	12, 43, 417, 936
TseFI	GTSAC	4 cut(s)	7, 217, 373, 871
TseI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
Tsp45I	GTSAC	4 cut(s)	7, 217, 373, 871
TspDTI	ATGAA	2 cut(s)	251, 725
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	4 cut(s)	12, 43, 417, 936
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	653, 675
XspI	CTAG	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.