Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

134390 .. 135465

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom290g00180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACTTTGGCAACCAAAATTTCCCCCCACCAAAAGGAAAGCCAATTGAGCAGTCGGCAGCAGCTTTTTTGGTTGAACAAGCAAGCCTTCACCCTGGAAAGGTCACTGTGGTAGCATTGGGCCAACTTACAAATATTGCACTGGCTACTCAACTAGACCCTGAATTCGCAAAGAACATAGGGCAGATTATTCTTCTTGGTGGTGCTTTTGCAGTCAATGGGAATGTCAATCCAGCAGCAGAGGCCAATATATATGGGGATCGAGATGCTGCAGATATGGTATTTACATGTGGAGCAGATATTTTGGCTATGGGGATTAATGTGACCCATCAAGTTGTCTTGACAGACATTGATCGAGAAAAGCTGGCAATGTCAAATGGAAAGTTTGCTCAACACTTGTGCAAACTTATAGATGTGTACTTCTCCTACCATCACAATGCGTATAGCACAAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

153

Amino Acids

16.24

Weight (kDa)

5.62

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	4 - 150	3.3e-38	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	19, 164
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	35, 100
AflIII	ACRYGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	65, 364
AluI	AGCT	2 cut(s)	65, 364
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	121, 243
ApeKI	GCWGC	4 cut(s)	59, 62, 236, 269
ApoI	RAATTY	2 cut(s)	19, 164
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AseI	ATTAAT	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	83
BbvI	GCAGC	4 cut(s)	71, 74, 248, 256
BccI	CCATC	2 cut(s)	336, 438
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	4 cut(s)	60, 63, 237, 270
BlsI	GCNGC	4 cut(s)	61, 64, 238, 271
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 100
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	35, 100
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	71, 74, 248, 256
BshFI	GGCC	2 cut(s)	123, 245
BslI	CCNNNNNNNGG	2 cut(s)	35, 100
BsnI	GGCC	2 cut(s)	123, 245
Bsp143I	GATC	2 cut(s)	259, 352
BspANI	GGCC	2 cut(s)	123, 245
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	259, 352
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	85, 366
BstKTI	GATC	2 cut(s)	262, 355
BstMBI	GATC	2 cut(s)	259, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 242
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	4 cut(s)	71, 74, 248, 256
BsuRI	GGCC	2 cut(s)	123, 245
BtsIMutI	CAGTG	2 cut(s)	105, 140
Cac8I	GCNNGC	2 cut(s)	85, 366
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	288
CviJI	RGCY	8 cut(s)	43, 65, 87, 123, 146, 245, 308, 364
CviKI_1	RGCY	8 cut(s)	43, 65, 87, 123, 146, 245, 308, 364
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	2 cut(s)	261, 354
DpnII	GATC	2 cut(s)	259, 352
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	291
FaiI	YATR	9 cut(s)	179, 251, 253, 255, 278, 289, 311, 410, 444
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FatI	CATG	1 cut(s)	287
Fnu4HI	GCNGC	4 cut(s)	60, 63, 237, 270
Fsp4HI	GCNGC	4 cut(s)	60, 63, 237, 270
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	4 cut(s)	60, 63, 237, 270
HaeIII	GGCC	2 cut(s)	123, 245
Hin1II	CATG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	263, 340, 356
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	4 cut(s)	140, 212, 272, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 242
Hsp92II	CATG	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	259, 352
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	6 cut(s)	81, 108, 128, 174, 246, 350
Lsp1109I	GCAGC	4 cut(s)	71, 74, 248, 256
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	103, 322
MalI	GATC	2 cut(s)	261, 354
MboI	GATC	2 cut(s)	259, 352
MboII	GAAGA	1 cut(s)	185
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	19, 45, 164
MnlI	CCTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	49, 242
NdeII	GATC	2 cut(s)	259, 352
NlaIII	CATG	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	103, 322
NspI	RCATGY	1 cut(s)	291
PciI	ACATGT	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	61, 64, 238, 271
PscI	ACATGT	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	60, 63, 237, 270
Sau3AI	GATC	2 cut(s)	259, 352
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	4 cut(s)	67, 105, 366, 457
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	3 cut(s)	19, 45, 164
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	262, 355
TasI	AATT	3 cut(s)	19, 45, 164
TatI	WGTACW	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	112, 147
TseFI	GTSAC	2 cut(s)	103, 322
TseI	GCWGC	4 cut(s)	59, 62, 236, 269
Tsp45I	GTSAC	2 cut(s)	103, 322
TspRI	CASTG	2 cut(s)	112, 147
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	2 cut(s)	19, 164
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.