Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009647.1

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

18559 .. 21764

Gene Structure 3206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009647.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggcagtgaatgaacccaagaagatcatcatcgacaccgatcctggtatcgatgatgccatggccatattcgtggcattgaagtcgccagaggtggaagtgattggactgacaactatctatgggaatgtttatacaactctggccacgagaaatgccttgcatttgttggagtttgcagggagaactgatattcccgtggctgaaggatcccatgtcacaataactcaaggtacaaaacttcgtattgctgattttgttcatggtacggatggacttggaaaccaaaacttccctccaccaattggaaagccaattgaacagtctgcagcagcttttctggtggagcaagcaaacctttaccctggaaaagtcactgtggtagctttaggcccacttacaaatattgcacaggctatacaactagatcctgcatttgcaaagaacattgggcagattgttcttcttggtggcgcttttgcagtcaatgggaatgtaaatccagcagcagaggccaatatatttggagatccagatgctgcagatatagtattcacaagtggagcagatgttttggccgtgggcctaaatgttacccatcaagttgtcttgacagatgctgatcgggacaagttgaccaagtcaaatggaaaatttgctcagtacctgtgcaaaattttagatgtgtacttctcttaccatcatgatgcctatagcacgaaaggagtttaccttcatgatcctacagcccttctggcagctgttaatccttcacttctaacttacacagagggtgttgttagagttcagacaagtggcatcacaagagggctcacaactttgtataacaaacagaaaaggttcggtgaagtcacagaatggtgtgataaacccacggcgaaggtagcagttactgttgatgctcccacagtggtcaacttggtcatggaacggctgatggactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

322

Amino Acids

34.38

Weight (kDa)

5.22

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AclWI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
AcoI	YGGCCR	3 cut(s)	63, 144, 576
AcsI	RAATTY	2 cut(s)	653, 675
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	235, 268, 665, 689
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	82, 320
AjnI	CCWGG	2 cut(s)	43, 364
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	335, 386, 761
AluI	AGCT	3 cut(s)	335, 386, 761
AlwI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
AlwNI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
AoxI	GGCC	6 cut(s)	63, 144, 391, 513, 576, 583
ApeKI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
ApoI	RAATTY	2 cut(s)	653, 675
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	392, 583
AsuHPI	GGTGA	1 cut(s)	878
BalI	TGGCCA	2 cut(s)	65, 146
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	834
BauI	CACGAG	1 cut(s)	148
BbvI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BccI	CCATC	4 cut(s)	266, 606, 708, 952
BceAI	ACGGC	2 cut(s)	563, 912
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	2 cut(s)	45, 366
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	4 cut(s)	327, 540, 712, 744
BfoI	RGCGCY	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	755
BisI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
BlsI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
Bme1390I	CCNGG	2 cut(s)	45, 366
BmgT120I	GGNCC	2 cut(s)	392, 583
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	45, 366
BmsI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
BpuEI	CTTGAG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	2 cut(s)	29, 621
BsaJI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse8I	GATNNNNATC	2 cut(s)	29, 621
BseBI	CCWGG	2 cut(s)	45, 366
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	2 cut(s)	29, 621
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	674
BseXI	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BshFI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BshVI	ATCGAT	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BspCNI	CTCAG	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	2 cut(s)	703, 736
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	2 cut(s)	331, 544
BspPI	GGATC	6 cut(s)	35, 204, 217, 422, 524, 734
BssECI	CCNNGG	5 cut(s)	60, 198, 364, 579, 894
BssMI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	45, 366
Bst4CI	ACNGT	4 cut(s)	324, 379, 916, 931
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	4 cut(s)	60, 198, 579, 894
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	7 cut(s)	27, 43, 212, 430, 532, 625, 742
BstMBI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
BstNI	CCWGG	2 cut(s)	45, 366
BstSCI	CCNGG	2 cut(s)	43, 364
BstSFI	CTRYAG	4 cut(s)	327, 540, 712, 744
BstV1I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
BstX2I	RGATCY	3 cut(s)	209, 427, 529
BstXI	CCANNNNNNTGG	1 cut(s)	73
BstYI	RGATCY	3 cut(s)	209, 427, 529
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	4 cut(s)	60, 198, 579, 894
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 375, 936
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
CciI	TCATGA	2 cut(s)	703, 736
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	392, 583
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	234, 267, 664, 688
CviAII	CATG	6 cut(s)	61, 215, 263, 704, 737, 946
CviQI	GTAC	4 cut(s)	234, 267, 664, 688
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	7 cut(s)	26, 42, 211, 429, 531, 624, 741
DpnII	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
EaeI	YGGCCR	3 cut(s)	63, 144, 576
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	43, 364
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	60, 214, 262, 703, 736, 945
Fnu4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	6 cut(s)	65, 146, 393, 515, 578, 585
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	2 cut(s)	636, 937
HindII	GTYRAC	2 cut(s)	636, 937
HinfI	GANTC	1 cut(s)	962
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	4 cut(s)	636, 688, 730, 937
Hpy188I	TCNGA	1 cut(s)	810
Hpy188III	TCNNGA	6 cut(s)	533, 610, 626, 704, 737, 966
Hpy8I	GTNNAC	4 cut(s)	636, 688, 730, 937
HpyAV	CCTTC	5 cut(s)	200, 743, 761, 780, 895
HpyCH4III	ACNGT	4 cut(s)	324, 379, 916, 931
HpyCH4V	TGCA	9 cut(s)	163, 179, 329, 410, 434, 440, 482, 542, 672
HpyF10VI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
HpyF3I	CTNAG	1 cut(s)	660
Hsp92II	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
LmnI	GCTCC	3 cut(s)	346, 563, 928
Lsp1109I	GCAGC	5 cut(s)	341, 344, 518, 526, 770
LweI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	5 cut(s)	217, 373, 592, 871, 910
MalI	GATC	7 cut(s)	26, 42, 211, 429, 531, 624, 741
MboI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
MboII	GAAGA	2 cut(s)	34, 455
MfeI	CAATTG	2 cut(s)	303, 315
MflI	RGATCY	3 cut(s)	209, 427, 529
MhlI	GDGCHC	1 cut(s)	834
MlsI	TGGCCA	2 cut(s)	65, 146
MluCI	AATT	4 cut(s)	303, 315, 653, 675
MluNI	TGGCCA	2 cut(s)	65, 146
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	85, 306, 505, 784, 821
Mox20I	TGGCCA	2 cut(s)	65, 146
MroXI	GAANNNNTTC	1 cut(s)	860
MscI	TGGCCA	2 cut(s)	65, 146
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	2 cut(s)	71, 705
Msp20I	TGGCCA	2 cut(s)	65, 146
MspA1I	CMGCKG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	45, 366
MunI	CAATTG	2 cut(s)	303, 315
MvaI	CCWGG	2 cut(s)	45, 366
MwoI	GCNNNNNNNGC	3 cut(s)	512, 755, 905
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
NlaIII	CATG	6 cut(s)	64, 218, 266, 707, 740, 949
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	217, 373, 871
PagI	TCATGA	2 cut(s)	703, 736
PdmI	GAANNNNTTC	1 cut(s)	860
PflFI	GACNNNGTC	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	5 cut(s)	331, 334, 508, 541, 760
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
Psp6I	CCWGG	2 cut(s)	43, 364
PspGI	CCWGG	2 cut(s)	43, 364
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	392, 583
PstI	CTGCAG	2 cut(s)	331, 544
PstNI	CAGNNNCTG	4 cut(s)	539, 620, 667, 914
PsuI	RGATCY	3 cut(s)	209, 427, 529
PsyI	GACNNNGTC	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	4 cut(s)	235, 268, 665, 689
RsaNI	GTAC	4 cut(s)	234, 267, 664, 688
RseI	CAYNNNNRTG	2 cut(s)	71, 705
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	5 cut(s)	330, 333, 507, 540, 759
Sau3AI	GATC	7 cut(s)	24, 40, 209, 427, 529, 622, 739
Sau96I	GGNCC	2 cut(s)	392, 583
SchI	GAGTC	1 cut(s)	956
ScrFI	CCNGG	2 cut(s)	45, 366
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	6 cut(s)	46, 526, 607, 697, 828, 910
SfcI	CTRYAG	4 cut(s)	327, 540, 712, 744
SmiMI	CAYNNNNRTG	2 cut(s)	71, 705
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	303, 315, 653, 675
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	43, 364
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	324, 379, 916, 931
TaqI	TCGA	2 cut(s)	33, 51
TasI	AATT	4 cut(s)	303, 315, 653, 675
TatI	WGTACW	1 cut(s)	687
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	3 cut(s)	12, 382, 936
TseFI	GTSAC	3 cut(s)	217, 373, 871
TseI	GCWGC	5 cut(s)	329, 332, 506, 539, 758
Tsp45I	GTSAC	3 cut(s)	217, 373, 871
TspDTI	ATGAA	3 cut(s)	27, 251, 725
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	3 cut(s)	12, 382, 936
Tth111I	GACNNNGTC	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	2 cut(s)	653, 675
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.