Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

17759040 .. 17763119

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1087000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACGTATAAAATAGACAGACAGATCAGGCTTTCAGGCCAGTGCAGAGCAAAAACATGGAAAGAAAGAATTAATGTCGAATTCCAATTGAATCGTCCCAAGTTCGAATCTTTTAATTTTTTCTGGTACAATCACTCCAACCCAATCCAATCCAGAAAGTGGTTTCCTTTGACTGCTGGATTGATTCTGAGTTCCAGCATGGCAGATGTGGCGGCGAAGGAAACCAAGAAGATCATCATTGACACCGACCCTGGTATCGATGATGCCATGGCCATCTTTGTGGCATTACAATCCCCGGAAGTGCAAGTGATTGGACTTACTACTATTTATGGAAATGTTTATACCACTCTCGCCACAAGAAATGCCTTGCATTTGTTGGAGGTTGCAGGGAGAACCGATATTCCAGTGGCGGAAGGATCTCACGTCACAATAACGAAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTGCGGATGGACTTGGCAACCAAAATTTCCCCCCACCAAAAGGAAAGCCAATTGAGCAGTCGGCAGCAGCTTTTCTGGTTGAACAAGCAAGCCTTTACCCTGGAAAGGTCACTGTGGTAGCATTGGGCCCACTTACAAATATTGCACTGGCTACTCAACTAGACCCTGAATTTGCAAAGAACATAGGGCAGATTATTCTTCTTGGTGGTGCTTTTGCAGTCAATGGGAATGTCAATCCAGCAGCAGAGGCCAATATATTTGGGGATCCAGATGCTGCAGATATGGTATTTACATGTGGAGCAGATATTTTGGCTATGGGGATTAATGTGACCCATCAAGTTGTCTTGACAGACGCTGATCGAGAAAAGCTGGCAATGTCAAATGGAAAGTTTGCTCAATACTTGTGCAAAATTTTAGATGTGTACTTCTCCTACCATCACGATGCGTATAGCACAAAAGGAGTTTACCTTCATGACCCTGCAGTAGTTGTTGCAGCTGTTGATCCTTCACTTTTCACTTACACGGAGGGTGTTGTTAGAGTCCAGACAAATGGCATCACAAGAGGACTCACGATTCTGTACAACAAACAGAAAAGGTTTGGCGAGGTGACAGAGTGGTGTGATAAACCCACAGTCAAGGTAGCAGTGACGGTTGATGCCCACACAGTTGTGAAATTGGTTATGGAACGGCTCATCGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

392

Amino Acids

42.79

Weight (kDa)

6.51

Isoelectric Point (pI)

22.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	78 - 380	6.5e-90	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	159
AciI	CCGC	3 cut(s)	212, 410, 476
AclWI	GGATC	4 cut(s)	424, 731, 744, 968
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	4 cut(s)	80, 496, 641, 882
AfaI	GTAC	4 cut(s)	128, 442, 896, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	159, 512, 577
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	2 cut(s)	91, 554
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	250, 571
AleI	CACNNNNGTG	1 cut(s)	1139
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
AluBI	AGCT	3 cut(s)	542, 841, 968
AluI	AGCT	3 cut(s)	542, 841, 968
AlwI	GGATC	4 cut(s)	424, 731, 744, 968
AlwNI	CAGNNNCTG	2 cut(s)	746, 827
AoxI	GGCC	4 cut(s)	37, 270, 598, 720
ApaI	GGGCCC	1 cut(s)	602
ApeKI	GCWGC	5 cut(s)	536, 539, 713, 746, 965
ApoI	RAATTY	4 cut(s)	80, 496, 641, 882
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AseI	ATTAAT	2 cut(s)	72, 795
AspS9I	GGNCC	2 cut(s)	598, 599
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	1090
AsuII	TTCGAA	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	602
BaeI	ACNNNNGTAYC	2 cut(s)	238, 271
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	602
BbvI	GCAGC	5 cut(s)	548, 551, 725, 733, 977
BccI	CCATC	4 cut(s)	281, 473, 813, 915
BciT130I	CCWGG	2 cut(s)	252, 573
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	2 cut(s)	747, 951
BisI	GCNGC	6 cut(s)	213, 537, 540, 714, 747, 966
BlsI	GCNGC	6 cut(s)	214, 538, 541, 715, 748, 967
Bme1390I	CCNGG	3 cut(s)	252, 296, 573
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	598, 599
BmiI	GGNNCC	2 cut(s)	600, 738
BmrFI	CCNGG	3 cut(s)	252, 296, 573
BmsI	GCATC	5 cut(s)	253, 733, 904, 1035, 1117
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	250, 267, 294, 571
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 512, 577
Bse1I	ACTGG	3 cut(s)	40, 404, 624
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	2 cut(s)	252, 573
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	250, 267, 294, 571
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	159, 512, 577
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	40, 404, 624
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	5 cut(s)	548, 551, 725, 733, 977
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	4 cut(s)	39, 272, 600, 722
BshVI	ATCGAT	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	159, 512, 577
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	4 cut(s)	39, 272, 600, 722
Bsp119I	TTCGAA	1 cut(s)	105
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	3 cut(s)	212, 410, 476
BspANI	GGCC	4 cut(s)	39, 272, 600, 722
BspCNI	CTCAG	1 cut(s)	180
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	2 cut(s)	943, 1172
BspLI	GGNNCC	2 cut(s)	600, 738
BspMAI	CTGCAG	2 cut(s)	751, 955
BspPI	GGATC	4 cut(s)	424, 731, 744, 968
BspT104I	TTCGAA	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	3 cut(s)	40, 404, 624
BssECI	CCNNGG	4 cut(s)	250, 267, 294, 571
BssMI	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	252, 573
Bst4CI	ACNGT	4 cut(s)	586, 1105, 1123, 1138
BstAUI	TGTACA	1 cut(s)	1050
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	562, 843
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	484
BstKTI	GATC	6 cut(s)	27, 234, 419, 739, 832, 976
BstMBI	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 526, 719
BstNI	CCWGG	2 cut(s)	252, 573
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	3 cut(s)	250, 294, 571
BstSFI	CTRYAG	2 cut(s)	747, 951
BstSLI	GKGCMC	1 cut(s)	602
BstV1I	GCAGC	5 cut(s)	548, 551, 725, 733, 977
BstX2I	RGATCY	2 cut(s)	416, 736
BstXI	CCANNNNNNTGG	2 cut(s)	280, 1022
BstYI	RGATCY	2 cut(s)	416, 736
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	39, 272, 600, 722
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	5 cut(s)	47, 411, 582, 617, 1122
Cac8I	GCNNGC	2 cut(s)	562, 843
CaiI	CAGNNNCTG	2 cut(s)	746, 827
CciI	TCATGA	2 cut(s)	943, 1172
Cfr13I	GGNCC	2 cut(s)	598, 599
ClaI	ATCGAT	1 cut(s)	258
CseI	GACGC	1 cut(s)	833
Csp6I	GTAC	4 cut(s)	127, 441, 895, 1051
CviAII	CATG	7 cut(s)	57, 199, 268, 470, 765, 944, 1173
CviQI	GTAC	4 cut(s)	127, 441, 895, 1051
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	6 cut(s)	26, 233, 418, 738, 831, 975
DpnII	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
EaeI	YGGCCR	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	80
EcoRII	CCWGG	2 cut(s)	250, 571
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	7 cut(s)	60, 202, 271, 473, 768, 947, 1176
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	7 cut(s)	56, 198, 267, 469, 764, 943, 1172
Fnu4HI	GCNGC	6 cut(s)	213, 537, 540, 714, 747, 966
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	6 cut(s)	213, 537, 540, 714, 747, 966
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	6 cut(s)	213, 537, 540, 714, 747, 966
HaeIII	GGCC	4 cut(s)	39, 272, 600, 722
HapII	CCGG	1 cut(s)	296
HgaI	GACGC	1 cut(s)	833
Hin1II	CATG	7 cut(s)	60, 202, 271, 473, 768, 947, 1176
HinfI	GANTC	7 cut(s)	91, 107, 184, 1011, 1038, 1045, 1169
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	1 cut(s)	1090
Hpy166II	GTNNAC	2 cut(s)	895, 937
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	9 cut(s)	153, 740, 817, 833, 911, 944, 1015, 1042, 1173
Hpy8I	GTNNAC	2 cut(s)	895, 937
HpyAV	CCTTC	4 cut(s)	211, 407, 950, 987
HpyCH4III	ACNGT	4 cut(s)	586, 1105, 1123, 1138
HpyCH4IV	ACGT	2 cut(s)	5, 423
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 526, 719
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	2 cut(s)	5, 423
Hsp92II	CATG	7 cut(s)	60, 202, 271, 473, 768, 947, 1176
Kzo9I	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	5 cut(s)	548, 551, 725, 733, 977
LweI	GCATC	5 cut(s)	253, 733, 904, 1035, 1117
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	2 cut(s)	5, 423
MaeIII	GTNAC	5 cut(s)	424, 580, 799, 1078, 1117
MalI	GATC	6 cut(s)	26, 233, 418, 738, 831, 975
MboI	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
MboII	GAAGA	2 cut(s)	241, 662
MfeI	CAATTG	2 cut(s)	86, 522
MflI	RGATCY	2 cut(s)	416, 736
MhlI	GDGCHC	1 cut(s)	602
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	9 cut(s)	69, 80, 86, 115, 496, 522, 641, 882, 1145
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	1020, 1032
MmeI	TCCRAC	2 cut(s)	162, 357
MnlI	CCTC	5 cut(s)	373, 712, 991, 1028, 1069
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	3 cut(s)	72, 114, 795
MslI	CAYNNNNRTG	3 cut(s)	278, 912, 1139
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	252, 296, 573
MunI	CAATTG	2 cut(s)	86, 522
MvaI	CCWGG	2 cut(s)	252, 573
MwoI	GCNNNNNNNGC	3 cut(s)	209, 526, 719
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
NlaIII	CATG	7 cut(s)	60, 202, 271, 473, 768, 947, 1176
NlaIV	GGNNCC	2 cut(s)	600, 738
NmuCI	GTSAC	5 cut(s)	424, 580, 799, 1078, 1117
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	1139
PagI	TCATGA	2 cut(s)	943, 1172
PciI	ACATGT	1 cut(s)	764
PfeI	GAWTC	5 cut(s)	91, 107, 184, 1045, 1169
PflMI	CCANNNNNTGG	1 cut(s)	159
PkrI	GCNGC	6 cut(s)	214, 538, 541, 715, 748, 967
PleI	GAGTC	2 cut(s)	1019, 1032
PpsI	GAGTC	2 cut(s)	1019, 1032
PscI	ACATGT	1 cut(s)	764
PshBI	ATTAAT	2 cut(s)	72, 795
Psp6I	CCWGG	2 cut(s)	250, 571
PspGI	CCWGG	2 cut(s)	250, 571
PspN4I	GGNNCC	2 cut(s)	600, 738
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	2 cut(s)	598, 599
PstI	CTGCAG	2 cut(s)	751, 955
PstNI	CAGNNNCTG	2 cut(s)	746, 827
PsuI	RGATCY	2 cut(s)	416, 736
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	4 cut(s)	128, 442, 896, 1052
RsaNI	GTAC	4 cut(s)	127, 441, 895, 1051
RseI	CAYNNNNRTG	3 cut(s)	278, 912, 1139
SaqAI	TTAA	3 cut(s)	72, 114, 795
SatI	GCNGC	6 cut(s)	213, 537, 540, 714, 747, 966
Sau3AI	GATC	6 cut(s)	24, 231, 416, 736, 829, 973
Sau96I	GGNCC	2 cut(s)	598, 599
SchI	GAGTC	2 cut(s)	1020, 1032
ScrFI	CCNGG	3 cut(s)	252, 296, 573
SduI	GDGCHC	1 cut(s)	602
SfaNI	GCATC	5 cut(s)	253, 733, 904, 1035, 1117
SfcI	CTRYAG	2 cut(s)	747, 951
SfuI	TTCGAA	1 cut(s)	105
SmiMI	CAYNNNNRTG	3 cut(s)	278, 912, 1139
Sse9I	AATT	9 cut(s)	69, 80, 86, 115, 496, 522, 641, 882, 1145
SsiI	CCGC	3 cut(s)	212, 410, 476
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	3 cut(s)	250, 294, 571
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	586, 1105, 1123, 1138
TaiI	ACGT	2 cut(s)	8, 426
TaqI	TCGA	5 cut(s)	78, 105, 258, 832, 1167
TasI	AATT	9 cut(s)	69, 80, 86, 115, 496, 522, 641, 882, 1145
TatI	WGTACW	2 cut(s)	894, 1050
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	5 cut(s)	91, 107, 184, 1045, 1169
Tru1I	TTAA	3 cut(s)	72, 114, 795
Tru9I	TTAA	3 cut(s)	72, 114, 795
TscAI	CASTG	5 cut(s)	47, 411, 589, 624, 1122
TseFI	GTSAC	5 cut(s)	424, 580, 799, 1078, 1117
TseI	GCWGC	5 cut(s)	536, 539, 713, 746, 965
Tsp45I	GTSAC	5 cut(s)	424, 580, 799, 1078, 1117
TspDTI	ATGAA	2 cut(s)	458, 932
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	5 cut(s)	47, 411, 589, 624, 1122
Van91I	CCANNNNNTGG	1 cut(s)	159
VspI	ATTAAT	2 cut(s)	72, 795
XapI	RAATTY	4 cut(s)	80, 496, 641, 882
XceI	RCATGY	1 cut(s)	768
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.