Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010784

Physical Location & Seq

Genomic Coordinates Forward (+)

92524194 .. 92527850

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCAGTGAATGAACCCAAGAAGATCATCATTGACACCGATCCTGGTATCGATGATGCCATGGCCATATTCGTGGCATTGAAGTCGCCAGAGGTGGAAGTGATTGGACTGACAACTATCTATGGGAATGTTTATACAACTCTGGCCACGAGAAATGCCTTACATTTGTTGGAGTTTGCAGGGAGAACTGATATTCCCGTGGCTGAAGGATCCCATTCTGGCATAACTCCCCAATTGTTGCCACTTGTTTCCGTAAAGCAAGGTACAAAACTTCGTATTGCTGATTTTGTTCATGGTACGGATGGACTTGGAAACCAAAACTTCCCTCCGCCAAATGGAAAGCCAATTGAACAGTCTGCAGCAGCTTTTCTGGTGGAGCAAGCAAACCTTTACCCTGGAAAAGTCACTGTGGTAGCATTAGGCCCACTTACAAATATTGCGCTGGCTATACAACTAGATCCTGCATTTGCAAAGAACATTGGGCAGATTGTTCTTCTTGGTGGTGCTTTTGCAGTCAATGGGAATGTAAATCCAGCAGCAGAGGCCAATATATTTGGAGATCCAGATGCTGCAGATATAGTATTCACAAGTGGAGCAGATGTTTTGGCCGTGGGCATAAATGTTACCCATCAAGTTGTCTTGACAGATGCTGATCGGGACAAGTTGGCCAAGTCAAATGGAAAATTTGCTCAGTACCTGTGCAAAATTTTAGATGTGTACTTCTCTTACCATCATGATGCCTATAGCACGAAAGGAGTTTACCTTCATGATCCTACAGCCCTTCTGGCAGCTGTTAATCCTTCACTTCTAACTTACACAGAGGGTGTTGTTAGAGTCCAGACAAGTGGCATCACAAGAGGGCTCACAATTTTGTATAACAAACAGAAAAGGTTTGGTGAAGTCACAGAATGGTGTGATAAACCCACGGCGAAGGTAGCAGTTACTGTTGATGCTCCCACAGTGGTCAACTTGGTCATGGAACGGCTCATGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006148 GO:0006152 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008194 GO:0008477 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009987 GO:0010150 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0016799 GO:0019439 GO:0032501 GO:0032502 GO:0034641 GO:0034655 GO:0034656 GO:0035251 GO:0042278 GO:0042454 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046102 GO:0046128 GO:0046130 GO:0046483 GO:0046527 GO:0046700 GO:0047724 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055086 GO:0071704 GO:0072521 GO:0072523 GO:0090693 GO:0099402 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00760 map00240 map00760

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

332

Amino Acids

35.36

Weight (kDa)

5.35

Isoelectric Point (pI)

18.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	9 - 321	2.5e-91	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05620 AT1G05620
fragaria_vesca	FvH4_1g00210
malus_domestica	MD00G1087000.v1.1 MD15G1142900.v1.1
prunus_persica	Prupe.7G270100_v2.0.a1 Prupe.7G270100_v2.0.a1
pyrus_communis	pycom15g12900 pycom290g00180
rosa_chinensis	RchiOBHm_Chr2g0084501
rosa_multiflora	Rmu_co8418457.1_g000001 Rmu_sc0009647.1_g000005
rosa_roxburghii	Rroxscaffold_2G00156010
rosa_rugosa	Rorug01G0454600 Rorug01G0454600
rosa_samantha	Rh2AG002600 Rh2BG002200 Rh2CG002700 Rh2DG002700
rosa_wichuraiana	Rw2G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	6 cut(s)	35, 204, 217, 452, 554, 764
AcoI	YGGCCR	4 cut(s)	63, 144, 606, 666
AcsI	RAATTY	2 cut(s)	683, 705
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	4 cut(s)	265, 298, 695, 719
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	82, 350
AjnI	CCWGG	2 cut(s)	43, 394
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	2 cut(s)	365, 791
AluI	AGCT	2 cut(s)	365, 791
AlwI	GGATC	6 cut(s)	35, 204, 217, 452, 554, 764
AlwNI	CAGNNNCTG	4 cut(s)	569, 650, 697, 944
AoxI	GGCC	6 cut(s)	63, 144, 421, 543, 606, 666
ApeKI	GCWGC	5 cut(s)	359, 362, 536, 569, 788
ApoI	RAATTY	2 cut(s)	683, 705
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	908
BalI	TGGCCA	3 cut(s)	65, 146, 668
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	864
BauI	CACGAG	1 cut(s)	148
BbvI	GCAGC	5 cut(s)	371, 374, 548, 556, 800
BccI	CCATC	3 cut(s)	296, 636, 738
BceAI	ACGGC	2 cut(s)	593, 942
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	2 cut(s)	45, 396
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	4 cut(s)	357, 570, 742, 774
BglI	GCCNNNNNGGC	1 cut(s)	785
BisI	GCNGC	5 cut(s)	360, 363, 537, 570, 789
BlsI	GCNGC	5 cut(s)	361, 364, 538, 571, 790
Bme1390I	CCNGG	2 cut(s)	45, 396
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	45, 396
BmsI	GCATC	6 cut(s)	46, 556, 637, 727, 858, 940
Bsa29I	ATCGAT	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	5 cut(s)	60, 198, 394, 609, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	45, 396
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	5 cut(s)	60, 198, 394, 609, 924
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	704
BseXI	GCAGC	5 cut(s)	371, 374, 548, 556, 800
BshFI	GGCC	6 cut(s)	65, 146, 423, 545, 608, 668
BshVI	ATCGAT	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	6 cut(s)	65, 146, 423, 545, 608, 668
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	6 cut(s)	65, 146, 423, 545, 608, 668
BspCNI	CTCAG	1 cut(s)	703
BspDI	ATCGAT	1 cut(s)	51
BspHI	TCATGA	2 cut(s)	733, 766
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	2 cut(s)	361, 574
BspPI	GGATC	6 cut(s)	35, 204, 217, 452, 554, 764
BssECI	CCNNGG	5 cut(s)	60, 198, 394, 609, 924
BssMI	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
BssSI	CACGAG	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	45, 396
Bst4CI	ACNGT	4 cut(s)	354, 409, 946, 961
BstC8I	GCNNGC	2 cut(s)	381, 444
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	4 cut(s)	60, 198, 609, 924
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	7 cut(s)	27, 43, 212, 460, 562, 655, 772
BstMBI	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	542, 785, 935
BstNI	CCWGG	2 cut(s)	45, 396
BstSCI	CCNGG	2 cut(s)	43, 394
BstSFI	CTRYAG	4 cut(s)	357, 570, 742, 774
BstV1I	GCAGC	5 cut(s)	371, 374, 548, 556, 800
BstX2I	RGATCY	3 cut(s)	209, 457, 559
BstXI	CCANNNNNNTGG	2 cut(s)	73, 845
BstYI	RGATCY	3 cut(s)	209, 457, 559
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	65, 146, 423, 545, 608, 668
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	4 cut(s)	60, 198, 609, 924
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 405, 966
Cac8I	GCNNGC	2 cut(s)	381, 444
CaiI	CAGNNNCTG	4 cut(s)	569, 650, 697, 944
CciI	TCATGA	2 cut(s)	733, 766
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	4 cut(s)	264, 297, 694, 718
CviAII	CATG	6 cut(s)	61, 293, 734, 767, 976, 988
CviQI	GTAC	4 cut(s)	264, 297, 694, 718
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	7 cut(s)	26, 42, 211, 459, 561, 654, 771
DpnII	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
EaeI	YGGCCR	4 cut(s)	63, 144, 606, 666
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	43, 394
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	6 cut(s)	64, 296, 737, 770, 979, 991
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	6 cut(s)	60, 292, 733, 766, 975, 987
Fnu4HI	GCNGC	5 cut(s)	360, 363, 537, 570, 789
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	5 cut(s)	360, 363, 537, 570, 789
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	5 cut(s)	360, 363, 537, 570, 789
HaeIII	GGCC	6 cut(s)	65, 146, 423, 545, 608, 668
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	6 cut(s)	64, 296, 737, 770, 979, 991
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	2 cut(s)	834, 992
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	3 cut(s)	718, 760, 967
Hpy188III	TCNNGA	7 cut(s)	563, 640, 656, 734, 767, 838, 996
Hpy8I	GTNNAC	3 cut(s)	718, 760, 967
HpyAV	CCTTC	5 cut(s)	200, 773, 791, 810, 925
HpyCH4III	ACNGT	4 cut(s)	354, 409, 946, 961
HpyCH4V	TGCA	7 cut(s)	179, 359, 464, 470, 512, 572, 702
HpyF10VI	GCNNNNNNNGC	3 cut(s)	542, 785, 935
HpyF3I	CTNAG	1 cut(s)	690
Hsp92II	CATG	6 cut(s)	64, 296, 737, 770, 979, 991
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
LmnI	GCTCC	3 cut(s)	376, 593, 958
Lsp1109I	GCAGC	5 cut(s)	371, 374, 548, 556, 800
LweI	GCATC	6 cut(s)	46, 556, 637, 727, 858, 940
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	4 cut(s)	403, 622, 901, 940
MalI	GATC	7 cut(s)	26, 42, 211, 459, 561, 654, 771
MboI	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
MboII	GAAGA	2 cut(s)	34, 485
MfeI	CAATTG	2 cut(s)	233, 345
MflI	RGATCY	3 cut(s)	209, 457, 559
MhlI	GDGCHC	1 cut(s)	864
MlsI	TGGCCA	3 cut(s)	65, 146, 668
MluCI	AATT	5 cut(s)	233, 345, 683, 705, 867
MluNI	TGGCCA	3 cut(s)	65, 146, 668
MlyI	GAGTC	2 cut(s)	843, 986
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	85, 336, 535, 814, 851
Mox20I	TGGCCA	3 cut(s)	65, 146, 668
MscI	TGGCCA	3 cut(s)	65, 146, 668
MseI	TTAA	1 cut(s)	795
MslI	CAYNNNNRTG	2 cut(s)	71, 735
Msp20I	TGGCCA	3 cut(s)	65, 146, 668
MspA1I	CMGCKG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	45, 396
MunI	CAATTG	2 cut(s)	233, 345
MvaI	CCWGG	2 cut(s)	45, 396
MwoI	GCNNNNNNNGC	3 cut(s)	542, 785, 935
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
NlaIII	CATG	6 cut(s)	64, 296, 737, 770, 979, 991
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	403, 901
PagI	TCATGA	2 cut(s)	733, 766
PkrI	GCNGC	5 cut(s)	361, 364, 538, 571, 790
PleI	GAGTC	2 cut(s)	842, 986
PpsI	GAGTC	2 cut(s)	842, 986
Psp6I	CCWGG	2 cut(s)	43, 394
PspGI	CCWGG	2 cut(s)	43, 394
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	2 cut(s)	361, 574
PstNI	CAGNNNCTG	4 cut(s)	569, 650, 697, 944
PsuI	RGATCY	3 cut(s)	209, 457, 559
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	4 cut(s)	265, 298, 695, 719
RsaNI	GTAC	4 cut(s)	264, 297, 694, 718
RseI	CAYNNNNRTG	2 cut(s)	71, 735
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	5 cut(s)	360, 363, 537, 570, 789
Sau3AI	GATC	7 cut(s)	24, 40, 209, 457, 559, 652, 769
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	843, 986
ScrFI	CCNGG	2 cut(s)	45, 396
SduI	GDGCHC	1 cut(s)	864
SetI	ASST	9 cut(s)	96, 265, 367, 390, 699, 765, 793, 893, 936
SfaNI	GCATC	6 cut(s)	46, 556, 637, 727, 858, 940
SfcI	CTRYAG	4 cut(s)	357, 570, 742, 774
SmiMI	CAYNNNNRTG	2 cut(s)	71, 735
Sse9I	AATT	5 cut(s)	233, 345, 683, 705, 867
SsiI	CCGC	1 cut(s)	329
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	43, 394
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	354, 409, 946, 961
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	233, 345, 683, 705, 867
TatI	WGTACW	1 cut(s)	717
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	3 cut(s)	12, 412, 966
TseFI	GTSAC	2 cut(s)	403, 901
TseI	GCWGC	5 cut(s)	359, 362, 536, 569, 788
Tsp45I	GTSAC	2 cut(s)	403, 901
TspDTI	ATGAA	3 cut(s)	27, 281, 755
TspGWI	ACGGA	2 cut(s)	241, 314
TspRI	CASTG	3 cut(s)	12, 412, 966
XapI	RAATTY	2 cut(s)	683, 705
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.