Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

2168561 .. 2169957

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGAAAGGACGCCAAGGAGAACGTGTCAGACTCTATGTCAGGGGAACCATACTTGGCTACAAAAGGTCGAAGTCAAACCAGTATCCCAACACGTCACTAGTCCAAGTCGAGGGAGTTAACACCACTGAGGAAGTGTCATGGTACAAAGGTAAAAGGATGGCTTACATCTACAAAGCCAAGACCAAGAAGAACGGTAGTCACTACCGATGCATTTGGGGCAAAGTCACAAGGCCTCACGGTAACAGTGGCGTTGTTCGAGCCAAATTCACATCAAACTTGCCTCCTAAATCAATGGGATCTCGAGTTCGAGTGTTTATGTATCCGAGTAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

112

Amino Acids

12.85

Weight (kDa)

10.68

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 106	1.1e-44	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	112
AflIII	ACRYGT	2 cut(s)	25, 93
AhdI	GACNNNNNGTC	1 cut(s)	38
AhlI	ACTAGT	1 cut(s)	100
AjiI	CACGTC	1 cut(s)	96
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	303
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BccI	CCATC	1 cut(s)	154
BciVI	GTATCC	2 cut(s)	96, 333
BcuI	ACTAGT	1 cut(s)	100
BfaI	CTAG	1 cut(s)	101
BfuI	GTATCC	2 cut(s)	96, 333
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	303
BmgBI	CACGTC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	235
BsiHKCI	CYCGRG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	197, 242, 248
BstACI	GRCGYC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	2 cut(s)	96, 333
BsuRI	GGCC	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	126, 253
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	5 cut(s)	60, 164, 179, 235, 263
CviKI_1	RGCY	5 cut(s)	60, 164, 179, 235, 263
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	144
FaiI	YATR	4 cut(s)	39, 53, 142, 320
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	1 cut(s)	140
FokI	GGATG	1 cut(s)	172
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	144
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	33
HpaI	GTTAAC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	32, 327
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	197, 242, 248
HpyCH4IV	ACGT	2 cut(s)	25, 95
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	25, 95
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	144
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	299
LpnPI	CCDG	2 cut(s)	28, 95
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	25, 95
MaeIII	GTNAC	5 cut(s)	96, 200, 226, 242, 329
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	106, 124, 246, 294
Mph1103I	ATGCAT	1 cut(s)	215
MseI	TTAA	2 cut(s)	120, 337
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	3 cut(s)	96, 200, 226
NsiI	ATGCAT	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	235
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	120, 337
Sau3AI	GATC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	27
SetI	ASST	4 cut(s)	28, 71, 98, 154
SfaNI	GCATC	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	100
Sse9I	AATT	1 cut(s)	266
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	101
StuI	AGGCCT	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	197, 242, 248
TaiI	ACGT	2 cut(s)	28, 98
TaqI	TCGA	5 cut(s)	71, 111, 259, 304, 310
TasI	AATT	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	120, 337
Tru9I	TTAA	2 cut(s)	120, 337
TscAI	CASTG	2 cut(s)	133, 253
TseFI	GTSAC	3 cut(s)	96, 200, 226
Tsp45I	GTSAC	3 cut(s)	96, 200, 226
TspRI	CASTG	2 cut(s)	133, 253
XapI	RAATTY	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.