Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

23344513 .. 23346238

Gene Structure 1726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1144800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGAAGGGACGCCAAGGAGAGCGCATCAGACTGTATGTCCGAGGAACCGTCCTGGGATACAAGAGGTCCAAGTCGAATCAGTACCCGAGCACGTCGCTGATTCAGATCGAGAACGTGAACACCAAGGAGGATGTGGCGTGGTACGCCGGGAAGCGGCTGGCCTATATCTACAAGGCCAAGGTGAAGACGAACGGCAGCCACTACCGTTGCATTTGGGGAAAGGTCTCCAGGCCTCATGGGAACAGCGGCGTCGTTCGCGCCAAGTTTACATCCAATCTTCCCCCCAAATCCATGGTAAAGGAGCTAGAGTCAGGGTTTTCATGTACCCCAGCAACATTTGAGGTATGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

119

Amino Acids

13.26

Weight (kDa)

10.06

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 102	1.3e-40	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	157, 249
AcyI	GRCGYC	2 cut(s)	13, 252
AfaI	GTAC	3 cut(s)	86, 146, 328
AfiI	CCNNNNNNNGG	1 cut(s)	156
AhdI	GACNNNNNGTC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	2 cut(s)	54, 230
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	3 cut(s)	162, 177, 233
ApeKI	GCWGC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	27, 263
AspS9I	GGNCC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	16, 196
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	56, 232
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	158, 199, 250
BlsI	GCNGC	3 cut(s)	159, 200, 251
Bme1390I	CCNGG	3 cut(s)	56, 151, 232
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	56, 151, 232
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	13, 252
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	6 cut(s)	16, 43, 55, 126, 180, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	56, 232
BseDI	CCNNGG	6 cut(s)	16, 43, 55, 126, 180, 294
BseGI	GGATG	2 cut(s)	139, 272
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	164, 179, 235
BsiHKAI	GWGCWC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	164, 179, 235
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	157, 249
BspANI	GGCC	3 cut(s)	164, 179, 235
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	232
BssECI	CCNNGG	6 cut(s)	16, 43, 55, 126, 180, 294
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	2 cut(s)	13, 252
BssT1I	CCWWGG	4 cut(s)	16, 126, 180, 294
Bst2UI	CCWGG	2 cut(s)	56, 232
Bst4CI	ACNGT	3 cut(s)	36, 52, 209
BstACI	GRCGYC	2 cut(s)	13, 252
BstC8I	GCNNGC	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	139, 272
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	2 cut(s)	27, 263
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 258
BstNI	CCWGG	2 cut(s)	56, 232
BstSCI	CCNGG	3 cut(s)	54, 149, 230
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	164, 179, 235
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	139, 272
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	2 cut(s)	27, 263
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	2 cut(s)	21, 241
Csp6I	GTAC	3 cut(s)	85, 145, 327
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CviAII	CATG	3 cut(s)	239, 295, 324
CviJI	RGCY	7 cut(s)	160, 164, 179, 201, 235, 307, 354
CviKI_1	RGCY	7 cut(s)	160, 164, 179, 201, 235, 307, 354
CviQI	GTAC	3 cut(s)	85, 145, 327
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	4 cut(s)	16, 126, 180, 294
Eco147I	AGGCCT	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	54, 230
EcoT14I	CCWWGG	4 cut(s)	16, 126, 180, 294
ErhI	CCWWGG	4 cut(s)	16, 126, 180, 294
FaeI	CATG	3 cut(s)	242, 298, 327
FaiI	YATR	6 cut(s)	39, 168, 240, 296, 325, 349
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	3 cut(s)	238, 294, 323
Fnu4HI	GCNGC	3 cut(s)	158, 199, 250
FokI	GGATG	2 cut(s)	146, 259
Fsp4HI	GCNGC	3 cut(s)	158, 199, 250
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	26, 262
GluI	GCNGC	3 cut(s)	158, 199, 250
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	214
HaeIII	GGCC	3 cut(s)	164, 179, 235
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	2 cut(s)	21, 241
HhaI	GCGC	2 cut(s)	27, 263
Hin1I	GRCGYC	2 cut(s)	13, 252
Hin1II	CATG	3 cut(s)	242, 298, 327
Hin6I	GCGC	2 cut(s)	25, 261
HinP1I	GCGC	2 cut(s)	25, 261
HinfI	GANTC	3 cut(s)	79, 103, 311
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	16, 196
Hpy166II	GTNNAC	2 cut(s)	121, 270
Hpy188I	TCNGA	3 cut(s)	32, 44, 108
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	121, 270
Hpy99I	CGWCG	2 cut(s)	100, 257
HpyCH4III	ACNGT	3 cut(s)	36, 52, 209
HpyCH4IV	ACGT	2 cut(s)	95, 117
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 258
HpySE526I	ACGT	2 cut(s)	95, 117
Hsp92I	GRCGYC	2 cut(s)	13, 252
Hsp92II	CATG	3 cut(s)	242, 298, 327
HspAI	GCGC	2 cut(s)	25, 261
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	41, 68, 146, 163, 217, 244, 300, 345
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	95, 117
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	199, 272
MhlI	GDGCHC	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	5 cut(s)	38, 60, 124, 246, 337
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	56, 151, 232
MvaI	CCWGG	2 cut(s)	56, 232
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	146, 258
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	242, 298, 327
NlaIV	GGNNCC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	79, 103
PkrI	GCNGC	3 cut(s)	159, 200, 251
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	54, 230
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	2 cut(s)	54, 230
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	69
RsaI	GTAC	3 cut(s)	86, 146, 328
RsaNI	GTAC	3 cut(s)	85, 145, 327
SatI	GCNGC	3 cut(s)	158, 199, 250
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	56, 151, 232
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	71, 98, 120, 186, 228, 309, 348
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	69
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	157, 249
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	3 cut(s)	54, 149, 230
StyI	CCWWGG	4 cut(s)	16, 126, 180, 294
TaaI	ACNGT	3 cut(s)	36, 52, 209
TaiI	ACGT	2 cut(s)	98, 120
TaqI	TCGA	2 cut(s)	77, 111
TauI	GCSGC	2 cut(s)	160, 252
TfiI	GAWTC	2 cut(s)	79, 103
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.