Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8465513.1

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 486

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8465513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

gtccaagtcgaaccagtacccaaacacctcactgattcagatcgagggagtgaacaccaaggaggaagttgggtggtacgccggaaagcgattggcttatatctacaaggctaaggtgaagcagaacgggagccactaccgctgcatttggggaaaggttgctaggcctcacggtaacaccggtgttgttcgggctaagttcacctccaatttgccccccaagtccatgggtgctcgagtgagggtattcatgtatcccagcaatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

89

Amino Acids

10.05

Weight (kDa)

10.29

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	18, 78
AgeI	ACCGGT	1 cut(s)	180
Alw21I	GWGCWC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	142
AsiGI	ACCGGT	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	128, 194
AvaI	CYCGRG	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	58, 226
BsaWI	WCCGGW	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	58, 226
BseJI	GATNNNNATC	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	82, 181
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	58, 226
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	58, 226
Bst4CI	ACNGT	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	112, 196
BstDSI	CCRYGG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	129
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	17, 77
CspAI	ACCGGT	1 cut(s)	180
CviAII	CATG	2 cut(s)	227, 251
CviJI	RGCY	5 cut(s)	96, 111, 133, 167, 195
CviKI_1	RGCY	5 cut(s)	96, 111, 133, 167, 195
CviQI	GTAC	2 cut(s)	17, 77
DdeI	CTNAG	2 cut(s)	112, 196
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	58, 226
Eco147I	AGGCCT	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	58, 226
ErhI	CCWWGG	2 cut(s)	58, 226
FaeI	CATG	2 cut(s)	230, 254
FaiI	YATR	5 cut(s)	100, 228, 252, 267, 269
FatI	CATG	2 cut(s)	226, 250
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	163
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	82, 181
Hin1II	CATG	2 cut(s)	230, 254
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	2 cut(s)	82, 181
HphI	GGTGA	2 cut(s)	128, 194
Hpy166II	GTNNAC	2 cut(s)	53, 202
Hpy188I	TCNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	53, 202
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	112, 196
Hsp92II	CATG	2 cut(s)	230, 254
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	27, 95, 194
Lsp1109I	GCAGC	1 cut(s)	129
MaeI	CTAG	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	6 cut(s)	38, 38, 56, 178, 215, 235
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	82, 181
MwoI	GCNNNNNNNGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	230, 254
NlaIV	GGNNCC	1 cut(s)	132
PaeR7I	CTCGAG	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	235
RsaI	GTAC	2 cut(s)	18, 78
RsaNI	GTAC	2 cut(s)	17, 77
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	4 cut(s)	30, 118, 160, 207
Sfr274I	CTCGAG	1 cut(s)	235
SgrAI	CRCCGGYG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	163
StuI	AGGCCT	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	58, 226
TaaI	ACNGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	9, 43, 236
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	235
XspI	CTAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.