Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Reverse (-)

8999182 .. 9004096

Gene Structure 4915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTGAAGGGACGTCAAGGAGAGCGAGTCAGACTCTACGTCAGGGGAACTGTCCTCGGCTACAAAAGGTCCAAGTCGAACCAGTACCCAAACACCTCACTGATTCAGATCGAGGGAGTGAACACCAAGGAGGAAGTTGGGTGGTACGCCGGAAAGCGATTGGCTTATATCTACAAGGCTAAGGTGAAGCAGAACGGGAGCCACTACCGCTGCATTTGGGGAAAGGTTGCTAGGCCTCATGGTAACACCGGTGTTGTTCGGGCTAAGTTCACCTCCAATTTGCCCCCCAAGTCCATGGGTGCTCGAGTGAGGGCTATGGAAGTAAAAGCCTCGGCTAGACAGGGCTCAATGGGAAGGCATGCCTGTAGTCGCTTCAACACTCATAAGGGTGTAGCTCTGCTTCCATTTACAACACTGTCATGTGATAGCTTCAACCTCAACTTCAGCTCCAACTGCTCAGCTCAATACACAGGGGTGGTGGTCTCAGGTGGTGGCTGTGGTGGTGGTGCAAAGCAATTGAGCAAGTCATTGCAGCTTTTTTCTTCAACAAGATATACTACTACTAGTTCACCATCATTAACCACAATAAGGTTTAGAAGCAAGAGAATTGGGAAGTTTGATTTTTGGGCAAGAGCAGCAGCTAGTCATGGAAGTTTGGGGGAGGTAGATGAGTGTACATTGCCAGATAACAAGGTTGGACTTTCTTCTCAATCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

240

Amino Acids

26.03

Weight (kDa)

10.36

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 106	2.7e-42	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	16
AciI	CCGC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	3 cut(s)	86, 146, 676
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	376, 433, 546
AhdI	GACNNNNNGTC	1 cut(s)	38
AhlI	ACTAGT	1 cut(s)	563
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	6 cut(s)	395, 429, 447, 461, 535, 641
AluI	AGCT	6 cut(s)	395, 429, 447, 461, 535, 641
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	487
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	210, 532, 635, 638
AsiGI	ACCGGT	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	4 cut(s)	16, 196, 262, 561
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	197, 544, 647, 650
BccI	CCATC	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	487
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	4 cut(s)	231, 336, 564, 642
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	4 cut(s)	211, 533, 636, 639
BlpI	GCTNAGC	1 cut(s)	457
BlsI	GCNGC	4 cut(s)	212, 534, 637, 640
Bme18I	GGWCC	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	4 cut(s)	55, 126, 294, 330
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	527, 677
Bse8I	GATNNNNATC	1 cut(s)	107
BseDI	CCNNGG	4 cut(s)	55, 126, 294, 330
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	2 cut(s)	527, 677
BseMII	CTCAG	2 cut(s)	471, 498
BseNI	ACTGG	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	197, 544, 647, 650
BshFI	GGCC	1 cut(s)	235
BshTI	ACCGGT	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	150, 249
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	304, 347
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	470, 497
BspLI	GGNNCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	2 cut(s)	527, 677
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	55, 126, 294, 330
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	126, 294
Bst4CI	ACNGT	2 cut(s)	52, 417
BstACI	GRCGYC	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	674
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	4 cut(s)	180, 264, 457, 484
BstDSI	CCRYGG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 453, 635
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	4 cut(s)	197, 544, 647, 650
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	98, 413
Cac8I	GCNNGC	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	85, 145, 675
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	5 cut(s)	239, 295, 359, 420, 647
CviQI	GTAC	3 cut(s)	85, 145, 675
DdeI	CTNAG	4 cut(s)	180, 264, 457, 484
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	126, 294
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	126, 294
EcoT38I	GRGCYC	1 cut(s)	347
ErhI	CCWWGG	2 cut(s)	126, 294
FaeI	CATG	5 cut(s)	242, 298, 362, 423, 650
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	5 cut(s)	238, 294, 358, 419, 646
Fnu4HI	GCNGC	4 cut(s)	211, 533, 636, 639
FriOI	GRGCYC	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	211, 533, 636, 639
FspBI	CTAG	4 cut(s)	231, 336, 564, 642
GluI	GCNGC	4 cut(s)	211, 533, 636, 639
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	150, 249
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	5 cut(s)	242, 298, 362, 423, 650
HinfI	GANTC	3 cut(s)	27, 33, 103
HpaII	CCGG	2 cut(s)	150, 249
HphI	GGTGA	4 cut(s)	16, 196, 262, 561
Hpy166II	GTNNAC	4 cut(s)	121, 270, 569, 675
Hpy188I	TCNGA	2 cut(s)	32, 108
Hpy8I	GTNNAC	4 cut(s)	121, 270, 569, 675
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	52, 417
HpyCH4IV	ACGT	2 cut(s)	13, 39
HpyCH4V	TGCA	3 cut(s)	213, 509, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 453, 635
HpyF3I	CTNAG	4 cut(s)	180, 264, 457, 484
HpySE526I	ACGT	2 cut(s)	13, 39
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	5 cut(s)	242, 298, 362, 423, 650
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	198, 452
LpnPI	CCDG	9 cut(s)	28, 95, 163, 262, 326, 376, 456, 471, 696
Lsp1109I	GCAGC	4 cut(s)	197, 544, 647, 650
MaeI	CTAG	4 cut(s)	231, 336, 564, 642
MaeII	ACGT	2 cut(s)	13, 39
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	3 cut(s)	534, 696, 705
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	2 cut(s)	304, 347
MluCI	AATT	3 cut(s)	277, 515, 606
MlyI	GAGTC	2 cut(s)	27, 36
MmeI	TCCRAC	2 cut(s)	474, 676
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	3 cut(s)	387, 418, 473
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	150, 249
MunI	CAATTG	1 cut(s)	515
MwoI	GCNNNNNNNGC	3 cut(s)	207, 453, 635
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	5 cut(s)	242, 298, 362, 423, 650
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	2 cut(s)	36, 311
NspI	RCATGY	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	103
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	212, 534, 637, 640
PleI	GAGTC	2 cut(s)	27, 35
PpsI	GAGTC	2 cut(s)	27, 35
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	69
PspXI	VCTCGAGB	1 cut(s)	303
RsaI	GTAC	3 cut(s)	86, 146, 676
RsaNI	GTAC	3 cut(s)	85, 145, 675
RseI	CAYNNNNRTG	3 cut(s)	387, 418, 473
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	4 cut(s)	211, 533, 636, 639
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	69
SchI	GAGTC	2 cut(s)	27, 36
SduI	GDGCHC	2 cut(s)	304, 347
SfcI	CTRYAG	1 cut(s)	364
Sfr274I	CTCGAG	1 cut(s)	303
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	3 cut(s)	387, 418, 473
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	563
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	3 cut(s)	277, 515, 606
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	4 cut(s)	231, 336, 564, 642
StuI	AGGCCT	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	126, 294
TaaI	ACNGT	2 cut(s)	52, 417
TaiI	ACGT	2 cut(s)	16, 42
TaqI	TCGA	3 cut(s)	77, 111, 304
TasI	AATT	3 cut(s)	277, 515, 606
TatI	WGTACW	1 cut(s)	674
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	2 cut(s)	105, 420
TseI	GCWGC	4 cut(s)	210, 532, 635, 638
TspDTI	ATGAA	1 cut(s)	705
TspRI	CASTG	2 cut(s)	105, 420
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	4 cut(s)	231, 336, 564, 642
ZraI	GACGTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.