Prupe.6G269100_v2.0.a1

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0003771
Physical Location & Seq
Forward (+)
25607199 .. 25609304
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G269100.1

Sequence Viewer

Length: 339 bp
ATGGTGAAGGGCCGCCAAGGAGAGCGCATCAGACTCTATGTGCGAGGAACTGTTCTTGGATACAAGAGGTCCAAGTCGAATCAGTACCCCAGCGCGTCGCTGATTCAGATCGAGAATGTGAACACTAAGGAAGAGGTGGCCTGGTACGCTGGTAAGCGCTTGGCGTACATATACAAGGCCAAGGTGAAGAAGAACGGCAGCCATTACCGTTGCATTTGGGGCAAGGTCTCTAGGCCTCATGGTAACAGTGGCGTCGTTCGCGCCAAGTTCAAGTCCAATCTTCCCCCCAAGTCCATGGGAGCTAGAGTCAGGGTTTTCATGTATCCCAGCAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

113

Amino Acids

12.81

Weight (kDa)

10.7

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 95, 261
AciI CCGC 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 3 cut(s) 86, 146, 167
AfeI AGCGCT 1 cut(s) 158
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 4 cut(s) 10, 138, 177, 233
ApeKI GCWGC 1 cut(s) 198
AspLEI GCGC 4 cut(s) 27, 95, 159, 263
AspS9I GGNCC 2 cut(s) 10, 69
AsuHPI GGTGA 2 cut(s) 16, 196
AvaII GGWCC 1 cut(s) 69
BaeI ACNNNNGTAYC 2 cut(s) 136, 169
BbvI GCAGC 1 cut(s) 210
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 2 cut(s) 53, 333
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 231, 303
BfoI RGCGCY 1 cut(s) 160
BfuI GTATCC 2 cut(s) 53, 333
BisI GCNGC 2 cut(s) 13, 199
BlsI GCNGC 2 cut(s) 14, 200
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 10, 69
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 16, 180, 294
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 16, 180, 294
BseJI GATNNNNATC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 2 cut(s) 89, 326
Bsh1236I CGCG 2 cut(s) 95, 261
BshFI GGCC 4 cut(s) 12, 140, 179, 235
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 4 cut(s) 12, 140, 179, 235
Bso31I GGTCTC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 1 cut(s) 13
BspANI GGCC 4 cut(s) 12, 140, 179, 235
BspFNI CGCG 2 cut(s) 95, 261
BspTNI GGTCTC 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 16, 180, 294
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 3 cut(s) 16, 180, 294
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 3 cut(s) 52, 209, 248
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 95, 261
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 4 cut(s) 27, 95, 159, 263
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 146, 219, 258
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 2 cut(s) 95, 261
BstV1I GCAGC 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 295
BsuI GTATCC 2 cut(s) 53, 333
BsuRI GGCC 4 cut(s) 12, 140, 179, 235
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 253
CfoI GCGC 4 cut(s) 27, 95, 159, 263
Cfr13I GGNCC 2 cut(s) 10, 69
CseI GACGC 2 cut(s) 84, 241
Csp6I GTAC 3 cut(s) 85, 145, 166
CviAII CATG 3 cut(s) 239, 295, 319
CviJI RGCY 6 cut(s) 12, 140, 179, 201, 235, 302
CviKI_1 RGCY 6 cut(s) 12, 140, 179, 201, 235, 302
CviQI GTAC 3 cut(s) 85, 145, 166
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 3 cut(s) 16, 180, 294
Eco147I AGGCCT 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 69
Eco47III AGCGCT 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 16, 180, 294
ErhI CCWWGG 3 cut(s) 16, 180, 294
FaeI CATG 3 cut(s) 242, 298, 322
FaiI YATR 6 cut(s) 39, 170, 172, 240, 296, 320
FatI CATG 3 cut(s) 238, 294, 318
Fnu4HI GCNGC 2 cut(s) 13, 199
Fsp4HI GCNGC 2 cut(s) 13, 199
FspBI CTAG 2 cut(s) 231, 303
GlaI GCGC 4 cut(s) 26, 94, 158, 262
GluI GCNGC 2 cut(s) 13, 199
GsaI CCCAGC 2 cut(s) 93, 330
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 4 cut(s) 12, 140, 179, 235
HgaI GACGC 2 cut(s) 84, 241
HhaI GCGC 4 cut(s) 27, 95, 159, 263
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 242, 298, 322
Hin6I GCGC 4 cut(s) 25, 93, 157, 261
HinP1I GCGC 4 cut(s) 25, 93, 157, 261
HinfI GANTC 4 cut(s) 33, 79, 103, 306
HphI GGTGA 2 cut(s) 16, 196
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 32, 108
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 100, 257
HpyCH4III ACNGT 3 cut(s) 52, 209, 248
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 219, 258
HpyF3I CTNAG 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 242, 298, 322
HspAI GCGC 4 cut(s) 25, 93, 157, 261
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 5 cut(s) 103, 127, 135, 154, 295
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 36
MaeI CTAG 2 cut(s) 231, 303
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 4 cut(s) 143, 199, 202, 272
MlyI GAGTC 2 cut(s) 27, 315
MnlI CCTC 4 cut(s) 38, 60, 127, 246
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 95, 261
MwoI GCNNNNNNNGC 3 cut(s) 146, 219, 258
NcoI CCATGG 1 cut(s) 294
NdeII GATC 1 cut(s) 108
NlaIII CATG 3 cut(s) 242, 298, 322
PceI AGGCCT 1 cut(s) 235
PfeI GAWTC 2 cut(s) 79, 103
PkrI GCNGC 2 cut(s) 14, 200
PleI GAGTC 2 cut(s) 27, 314
PpsI GAGTC 2 cut(s) 27, 314
Psp6I CCWGG 1 cut(s) 140
PspFI CCCAGC 2 cut(s) 89, 326
PspGI CCWGG 1 cut(s) 140
PspPI GGNCC 2 cut(s) 10, 69
RsaI GTAC 3 cut(s) 86, 146, 167
RsaNI GTAC 3 cut(s) 85, 145, 166
SatI GCNGC 2 cut(s) 13, 199
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 2 cut(s) 10, 69
SchI GAGTC 2 cut(s) 27, 315
ScrFI CCNGG 1 cut(s) 142
SetI ASST 5 cut(s) 71, 138, 186, 228, 304
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 69
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 231, 303
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 3 cut(s) 16, 180, 294
TaaI ACNGT 3 cut(s) 52, 209, 248
TaqI TCGA 2 cut(s) 77, 111
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 79, 103
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 307
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 69
XspI CTAG 2 cut(s) 231, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.