Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

20698431 .. 20700200

Gene Structure 1770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAACAGTCCTCGGTTACAAGAGGTCCAAGTCGAACCAATACCCTAACACTTCTCTCGTCCAGATTGAAGGTGTGAACACTCAAGAGGAGGTTAATTGGTACAAGGGTAAGCGTTTGGCTTACATCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCACTAGGCCTCATGGTAACAGTGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCAAGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

10.68

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	11 - 105	1.5e-44	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	143, 320
AgsI	TTSAA	2 cut(s)	110, 273
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
AoxI	GGCC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	66
AvaII	GGWCC	1 cut(s)	66
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BbsI	GAAGAC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	228, 300, 324
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	304
BpuEI	CTTGAG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 288, 318
BseDI	CCNNGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	10
Bst4CI	ACNGT	4 cut(s)	49, 194, 206, 245
BstACI	GRCGYC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	142, 319
CviAII	CATG	2 cut(s)	236, 316
CviJI	RGCY	3 cut(s)	161, 232, 299
CviKI_1	RGCY	3 cut(s)	161, 232, 299
CviQI	GTAC	2 cut(s)	142, 319
DdeI	CTNAG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	66
FaeI	CATG	2 cut(s)	239, 319
FaiI	YATR	5 cut(s)	36, 237, 317, 332, 334
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	235, 315
FauNDI	CATATG	1 cut(s)	332
FspBI	CTAG	3 cut(s)	228, 300, 324
HaeIII	GGCC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	239, 319
HinfI	GANTC	2 cut(s)	303, 309
Hpy166II	GTNNAC	2 cut(s)	118, 267
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	2 cut(s)	103, 125
Hpy8I	GTNNAC	2 cut(s)	118, 267
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	4 cut(s)	49, 194, 206, 245
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	239, 319
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	1 cut(s)	116
MaeI	CTAG	3 cut(s)	228, 300, 324
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	3 cut(s)	56, 223, 239
MboII	GAAGA	2 cut(s)	199, 304
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	312, 318
MnlI	CCTC	5 cut(s)	57, 62, 121, 124, 243
MseI	TTAA	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	216
NdeI	CATATG	1 cut(s)	332
NlaIII	CATG	2 cut(s)	239, 319
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	232
PleI	GAGTC	2 cut(s)	311, 317
PpsI	GAGTC	2 cut(s)	311, 317
PspPI	GGNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	143, 320
RsaNI	GTAC	2 cut(s)	142, 319
SaqAI	TTAA	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	312, 318
SetI	ASST	6 cut(s)	13, 68, 115, 135, 279, 301
SinI	GGWCC	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	232
SspMI	CTAG	3 cut(s)	228, 300, 324
StuI	AGGCCT	1 cut(s)	232
TaaI	ACNGT	4 cut(s)	49, 194, 206, 245
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	17, 304
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	66
XspI	CTAG	3 cut(s)	228, 300, 324
ZraI	GACGTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.