Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Reverse (-)

27928171 .. 27929537

Gene Structure 1367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCAAGGGACGCCAAGGAGAACGAGTCAGACTCTACGTGAGGGGAACCATCCTCGGATACAAAAGGTCGAAGTCCAACCAGTATCCAAACACGTCCCTCGTCCAGATCGAAGGAGTTAACACTCAGGAGGAGGTAAACTGGTACAAGGGAAAGAGGATGGCTTACATCTACAAGGCTAAGACAAAGAAGAACGGTAGCCACTACCGCTGTATCTGGGGAAAGGTTACCAGGCCTCACGGTAACAGCGGTGTTGTCCGTGCCAAATTCACATCCAACCTTCCTCCCAAGTCCATGGGAAGCAGAGTGAGAGTCTTCATGTATCCGAGTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

112

Amino Acids

12.92

Weight (kDa)

10.68

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 106	3.1e-45	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 249
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	93
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BbsI	GAAGAC	1 cut(s)	307
BccI	CCATC	2 cut(s)	59, 154
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	3 cut(s)	53, 96, 333
BfuI	GTATCC	3 cut(s)	53, 96, 333
Bme1390I	CCNGG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	16, 55, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse1I	ACTGG	2 cut(s)	82, 146
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	3 cut(s)	16, 55, 294
BseGI	GGATG	3 cut(s)	51, 165, 272
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	2 cut(s)	82, 146
BseRI	GAGGAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	24, 82
BsmFI	GGGAC	2 cut(s)	24, 82
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	208, 249
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	82, 146
BssECI	CCNNGG	3 cut(s)	16, 55, 294
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	16, 294
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	197, 242
BstACI	GRCGYC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	126, 180
BstDSI	CCRYGG	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	51, 165, 272
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuI	GTATCC	3 cut(s)	53, 96, 333
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	51, 165, 272
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	2 cut(s)	295, 319
CviJI	RGCY	4 cut(s)	164, 179, 201, 235
CviKI_1	RGCY	4 cut(s)	164, 179, 201, 235
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	126, 180
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	16, 294
Eco147I	AGGCCT	1 cut(s)	235
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	16, 294
ErhI	CCWWGG	2 cut(s)	16, 294
FaeI	CATG	2 cut(s)	298, 322
FaiI	YATR	4 cut(s)	296, 320, 335, 337
FaqI	GGGAC	2 cut(s)	24, 82
FatI	CATG	2 cut(s)	294, 318
FauNDI	CATATG	1 cut(s)	335
FokI	GGATG	3 cut(s)	38, 172, 259
HaeIII	GGCC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	298, 322
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	27, 33, 312
HpaI	GTTAAC	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	121, 139
Hpy188I	TCNGA	3 cut(s)	32, 59, 327
Hpy188III	TCNNGA	2 cut(s)	106, 128
Hpy8I	GTNNAC	2 cut(s)	121, 139
HpyAV	CCTTC	2 cut(s)	107, 290
HpyCH4III	ACNGT	2 cut(s)	197, 242
HpyCH4IV	ACGT	2 cut(s)	39, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	126, 180
HpySE526I	ACGT	2 cut(s)	39, 95
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	298, 322
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	95, 113, 119, 127, 202, 217, 244
MaeII	ACGT	2 cut(s)	39, 95
MaeIII	GTNAC	3 cut(s)	226, 242, 329
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	202, 307
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	27, 36, 321
MmeI	TCCRAC	2 cut(s)	102, 300
MnlI	CCTC	8 cut(s)	36, 65, 110, 124, 127, 150, 246, 294
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	2 cut(s)	210, 249
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	294
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	298, 322
NlaIV	GGNNCC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PleI	GAGTC	3 cut(s)	27, 35, 320
PpsI	GAGTC	3 cut(s)	27, 35, 320
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	108
SchI	GAGTC	3 cut(s)	27, 36, 321
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	6 cut(s)	42, 71, 98, 138, 228, 282
Sse9I	AATT	1 cut(s)	266
SseBI	AGGCCT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	208, 249
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	16, 294
TaaI	ACNGT	2 cut(s)	197, 242
TaiI	ACGT	2 cut(s)	42, 98
TaqI	TCGA	2 cut(s)	71, 111
TasI	AATT	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	248
XapI	RAATTY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.