Prupe.2G244800_v2.0.a1

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0003771
Physical Location & Seq
Forward (+)
26242291 .. 26244504
2214 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G244800.1

Sequence Viewer

Length: 339 bp
ATGGTGAAGGAACGCCAAGGAGAACGAATTAGACTCTACGTCGGGGGCACCGTTCTCGGATACAAAAGGTCTAAGTCGAACCAATACCCAGGCACCTCCTTGATTCAGATCAATGGAGTGAACACCAAAGAGGAGGTGGCATGGTACGCTGGAAAGCGCTTGGCGTACATCTACAAGGCCAAGGTGAAGAAGAATGGGAGCCACTACCGCTGCATTTGGGGCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATCGTTCGTGCTAAGTTCACTTCCAATTTGCCACCCAAATCCATGGGTGCTCGTGTTAGGGTATTCATGTATCCCAGCAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048519 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

113

Amino Acids

12.69

Weight (kDa)

10.56

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 47, 92
AciI CCGC 1 cut(s) 208
AfaI GTAC 2 cut(s) 146, 167
AfeI AGCGCT 1 cut(s) 158
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 2 cut(s) 88, 230
Alw21I GWGCWC 1 cut(s) 304
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 2 cut(s) 177, 233
ApeKI GCWGC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 16, 196
BaeGI GKGCMC 1 cut(s) 50
BanI GGYRCC 2 cut(s) 47, 92
BauI CACGAG 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 2 cut(s) 90, 232
BciVI GTATCC 2 cut(s) 53, 333
BfoI RGCGCY 1 cut(s) 160
BfuI GTATCC 2 cut(s) 53, 333
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 2 cut(s) 90, 232
BmeRI GACNNNNNGTC 1 cut(s) 38
BmiI GGNNCC 3 cut(s) 49, 94, 200
BmrFI CCNGG 2 cut(s) 90, 232
BmsI GCATC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 16, 88, 180, 294
Bse8I GATNNNNATC 1 cut(s) 107
BseBI CCWGG 2 cut(s) 90, 232
BseDI CCNNGG 4 cut(s) 16, 88, 180, 294
BseJI GATNNNNATC 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 179, 235
BshNI GGYRCC 2 cut(s) 47, 92
BsiHKAI GWGCWC 1 cut(s) 304
BsnI GGCC 2 cut(s) 179, 235
Bsp1286I GDGCHC 2 cut(s) 50, 304
Bsp143I GATC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 1 cut(s) 208
BspANI GGCC 2 cut(s) 179, 235
BspLI GGNNCC 3 cut(s) 49, 94, 200
BspT107I GGYRCC 2 cut(s) 47, 92
BssECI CCNNGG 4 cut(s) 16, 88, 180, 294
BssMI GATC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 303
BssT1I CCWWGG 3 cut(s) 16, 180, 294
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 90, 232
Bst4CI ACNGT 2 cut(s) 52, 248
BstDEI CTNAG 2 cut(s) 72, 264
BstDSI CCRYGG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 146, 207, 219
BstNI CCWGG 2 cut(s) 90, 232
BstSCI CCNGG 2 cut(s) 88, 230
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 295
BsuI GTATCC 2 cut(s) 53, 333
BsuRI GGCC 2 cut(s) 179, 235
BtgI CCRYGG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 253
CfoI GCGC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 145, 166
CviAII CATG 4 cut(s) 141, 239, 295, 319
CviJI RGCY 3 cut(s) 179, 201, 235
CviKI_1 RGCY 3 cut(s) 179, 201, 235
CviQI GTAC 2 cut(s) 145, 166
DdeI CTNAG 2 cut(s) 72, 264
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 38
Eam1105I GACNNNNNGTC 1 cut(s) 38
Eco130I CCWWGG 3 cut(s) 16, 180, 294
Eco147I AGGCCT 1 cut(s) 235
Eco47III AGCGCT 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 88, 230
EcoT14I CCWWGG 3 cut(s) 16, 180, 294
ErhI CCWWGG 3 cut(s) 16, 180, 294
FaeI CATG 4 cut(s) 144, 242, 298, 322
FaiI YATR 6 cut(s) 142, 240, 296, 320, 335, 337
FatI CATG 4 cut(s) 140, 238, 294, 318
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 211
GsaI CCCAGC 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 2 cut(s) 179, 235
HhaI GCGC 1 cut(s) 159
Hin1II CATG 4 cut(s) 144, 242, 298, 322
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 2 cut(s) 33, 103
HphI GGTGA 2 cut(s) 16, 196
Hpy166II GTNNAC 2 cut(s) 121, 270
Hpy188I TCNGA 2 cut(s) 59, 108
Hpy8I GTNNAC 2 cut(s) 121, 270
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 52, 248
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 207, 219
HpyF3I CTNAG 2 cut(s) 72, 264
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 144, 242, 298, 322
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 5 cut(s) 75, 102, 135, 217, 244
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 261
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 2 cut(s) 199, 202
MhlI GDGCHC 2 cut(s) 50, 304
MluCI AATT 2 cut(s) 27, 277
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 106, 124, 127, 246
MspA1I CMGCKG 1 cut(s) 210
MspR9I CCNGG 2 cut(s) 90, 232
MvaI CCWGG 2 cut(s) 90, 232
MwoI GCNNNNNNNGC 3 cut(s) 146, 207, 219
NcoI CCATGG 1 cut(s) 294
NdeII GATC 1 cut(s) 108
NlaIII CATG 4 cut(s) 144, 242, 298, 322
NlaIV GGNNCC 3 cut(s) 49, 94, 200
PceI AGGCCT 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 88, 230
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 88, 230
PspN4I GGNNCC 3 cut(s) 49, 94, 200
RsaI GTAC 2 cut(s) 146, 167
RsaNI GTAC 2 cut(s) 145, 166
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 90, 232
SduI GDGCHC 2 cut(s) 50, 304
SetI ASST 6 cut(s) 42, 71, 98, 138, 186, 228
SfaNI GCATC 1 cut(s) 261
Sse9I AATT 2 cut(s) 27, 277
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 1 cut(s) 208
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 88, 230
StyI CCWWGG 3 cut(s) 16, 180, 294
TaaI ACNGT 2 cut(s) 52, 248
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 27, 277
TfiI GAWTC 1 cut(s) 103
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 307
TspRI CASTG 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.