Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Forward (+)

46648355 .. 46649254

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCTCTTCCCCGTGGAACCCTAGCAGCGCCGACTGGAGGCGCAGAGCATGAAGACGGCGGTCATTGCCGCCCTCGTAAAGCGCGCCAGACTCGCTCCGGCGTCAGCTCTCTCCCTATGGCCTTTTTACGGCTGGTCTTGGTCATCCCGATTCTGATTGGATCTACCCAATCTCTTACTGCAGATCTGATCCTGAGGGAGAAGGATCTTGCTGAGGAGTGCCTAACCTTTTGGGATGATGATGGTGGGAAGGCATATGCTATTTCTGTGTGGCATCCCGGCGATTTGACTCTACGGCGGAGTGTTGATATTGGTGGAATCGATATGTCCAGTTTTGATGTCTCGACTTCTGTGCTTGGGTTGCGACTGTCGGATCGTGGCGGCAAAGCCGACCGAGTTTGGATAGAAACTTGGCTGAGGAAGAAAGCAGTGTGGAAGATCGTCGGCATTGCAGGAGGAACCTGGCTGAGGATGGCGGCTGAGATGAGTGGCGGCGCTAGACTAGGTGCTGACGATGATTTCGAGTTGTTAAAAGGTTGGGTGCTCAGAGCATTTGGGCAGCCCAACTTCGATAGGAGGCCAAAGGGTGTATGTTATGACTGGAATATATTATCGCATTTGGCCTGTCCTGTAATGCACTTGGCTACAATGATTAGGAGATTGTTGGAGAGTAACTTTGAGCAACCAAAGAGGAAGAGCGGCCGTATTGTGGGTAATTTGAATGAGTTGCCTCATGGTACGGCGGGGACGAGCAAGACTGCGAAAAGTGATACTGACTTAGACGCGAAGACTACAACCAAGAGCCGAGAGACCAACCTGATGCCGAGGTTGTTGGCTACTGCAGAGGTTGAAGATGGTGCTGGTTCCAACCCTAAAGGGGAGGGACTAGCACCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

299

Amino Acids

32.54

Weight (kDa)

8.88

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	699
AccII	CGCG	2 cut(s)	85, 785
AciI	CCGC	8 cut(s)	60, 70, 298, 381, 476, 492, 699, 743
AclWI	GGATC	4 cut(s)	169, 184, 213, 381
AcoI	YGGCCR	1 cut(s)	700
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	5 cut(s)	38, 129, 468, 709, 877
AgsI	TTSAA	2 cut(s)	721, 851
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	346, 803
AlwI	GGATC	4 cut(s)	169, 184, 213, 381
AoxI	GGCC	4 cut(s)	120, 578, 621, 700
ApeKI	GCWGC	2 cut(s)	26, 559
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
AspLEI	GCGC	5 cut(s)	31, 44, 85, 87, 497
AsuC2I	CCSGG	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	60, 794
Bbv12I	GWGCWC	1 cut(s)	546
BbvCI	CCTCAGC	3 cut(s)	213, 416, 467
BbvI	GCAGC	2 cut(s)	38, 571
BccI	CCATC	3 cut(s)	236, 466, 848
BceAI	ACGGC	5 cut(s)	73, 146, 311, 687, 756
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	346, 803
BfaI	CTAG	4 cut(s)	23, 498, 503, 887
BfmI	CTRYAG	2 cut(s)	180, 840
BfoI	RGCGCY	2 cut(s)	32, 498
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	7 cut(s)	27, 70, 382, 477, 493, 560, 700
BlsI	GCNGC	7 cut(s)	28, 71, 383, 478, 494, 561, 701
Bme1390I	CCNGG	2 cut(s)	279, 463
BmiI	GGNNCC	3 cut(s)	19, 460, 865
BmrFI	CCNGG	2 cut(s)	279, 463
BmsI	GCATC	2 cut(s)	283, 810
BoxI	GACNNNNGTC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	60, 794
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	3 cut(s)	213, 416, 467
BpuMI	CCSGG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	803
BsaJI	CCNNGG	2 cut(s)	13, 824
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 129, 468, 709, 877
Bse1I	ACTGG	3 cut(s)	40, 330, 605
Bse21I	CCTNAGG	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	64, 447
BseBI	CCWGG	1 cut(s)	463
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	13, 824
BseGI	GGATG	4 cut(s)	144, 241, 274, 477
BseLI	CCNNNNNNNGG	5 cut(s)	38, 129, 468, 709, 877
BseMI	GCAATG	2 cut(s)	64, 447
BseMII	CTCAG	6 cut(s)	185, 204, 407, 458, 471, 559
BseNI	ACTGG	3 cut(s)	40, 330, 605
BsePI	GCGCGC	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	38, 571
Bsh1236I	CGCG	2 cut(s)	85, 785
Bsh1285I	CGRYCG	2 cut(s)	394, 703
BshFI	GGCC	4 cut(s)	122, 580, 623, 702
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	2 cut(s)	394, 703
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	99, 279
BslFI	GGGAC	1 cut(s)	760
BslI	CCNNNNNNNGG	5 cut(s)	38, 129, 468, 709, 877
BsmAI	GTCTC	2 cut(s)	346, 803
BsmFI	GGGAC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	122, 580, 623, 702
Bso31I	GGTCTC	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
BspACI	CCGC	8 cut(s)	60, 70, 298, 381, 476, 492, 699, 743
BspANI	GGCC	4 cut(s)	122, 580, 623, 702
BspCNI	CTCAG	6 cut(s)	186, 205, 408, 459, 472, 558
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	2 cut(s)	85, 785
BspLI	GGNNCC	3 cut(s)	19, 460, 865
BspMAI	CTGCAG	2 cut(s)	184, 844
BspPI	GGATC	4 cut(s)	169, 184, 213, 381
BspQI	GCTCTTC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	803
BsrBI	CCGCTC	1 cut(s)	699
BsrDI	GCAATG	2 cut(s)	64, 447
BsrI	ACTGG	3 cut(s)	40, 330, 605
BssECI	CCNNGG	2 cut(s)	13, 824
BssHII	GCGCGC	1 cut(s)	83
BssMI	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	12, 689
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	7 cut(s)	194, 213, 416, 467, 480, 545, 778
BstDSI	CCRYGG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	4 cut(s)	144, 241, 274, 477
BstFNI	CGCG	2 cut(s)	85, 785
BstH2I	RGCGCY	2 cut(s)	32, 498
BstHHI	GCGC	5 cut(s)	31, 44, 85, 87, 497
BstKTI	GATC	6 cut(s)	164, 187, 192, 208, 376, 441
BstMAI	GTCTC	2 cut(s)	346, 803
BstMBI	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
BstMCI	CGRYCG	2 cut(s)	394, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 93, 361
BstNI	CCWGG	1 cut(s)	463
BstPAI	GACNNNNGTC	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	277, 461
BstSFI	CTRYAG	2 cut(s)	180, 840
BstUI	CGCG	2 cut(s)	85, 785
BstV1I	GCAGC	2 cut(s)	38, 571
BstV2I	GAAGAC	2 cut(s)	60, 794
BstX2I	RGATCY	3 cut(s)	161, 184, 205
BstYI	RGATCY	3 cut(s)	161, 184, 205
BstZI	CGGCCG	1 cut(s)	700
Bsu15I	ATCGAT	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	122, 580, 623, 702
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	4 cut(s)	144, 241, 274, 477
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	5 cut(s)	31, 44, 85, 87, 497
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	2 cut(s)	91, 791
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	2 cut(s)	50, 734
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	7 cut(s)	194, 213, 416, 467, 480, 545, 778
DpnI	GATC	6 cut(s)	163, 186, 191, 207, 375, 440
DpnII	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
EaeI	YGGCCR	1 cut(s)	700
EagI	CGGCCG	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	12, 689
EarI	CTCTTC	2 cut(s)	12, 689
EciI	GGCGGA	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	803
Eco52I	CGGCCG	1 cut(s)	700
Eco81I	CCTNAGG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	53, 737
FaiI	YATR	9 cut(s)	51, 119, 256, 258, 326, 592, 597, 608, 735
FaqI	GGGAC	1 cut(s)	760
FatI	CATG	2 cut(s)	49, 733
FauI	CCCGC	1 cut(s)	736
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	7 cut(s)	27, 70, 382, 477, 493, 560, 700
FokI	GGATG	4 cut(s)	131, 248, 261, 484
Fsp4HI	GCNGC	7 cut(s)	27, 70, 382, 477, 493, 560, 700
FspBI	CTAG	4 cut(s)	23, 498, 503, 887
GlaI	GCGC	5 cut(s)	30, 43, 84, 86, 496
GluI	GCNGC	7 cut(s)	27, 70, 382, 477, 493, 560, 700
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	2 cut(s)	32, 498
HaeIII	GGCC	4 cut(s)	122, 580, 623, 702
HapII	CCGG	2 cut(s)	99, 279
HgaI	GACGC	2 cut(s)	91, 791
HhaI	GCGC	5 cut(s)	31, 44, 85, 87, 497
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	53, 737
Hin6I	GCGC	5 cut(s)	29, 42, 83, 85, 495
HinP1I	GCGC	5 cut(s)	29, 42, 83, 85, 495
HinfI	GANTC	4 cut(s)	91, 151, 289, 318
HpaII	CCGG	2 cut(s)	99, 279
Hpy188I	TCNGA	4 cut(s)	156, 189, 373, 548
Hpy188III	TCNNGA	3 cut(s)	148, 193, 343
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	196, 244
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	182, 452, 637, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 93, 361
HpyF3I	CTNAG	7 cut(s)	194, 213, 416, 467, 480, 545, 778
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	53, 737
HspAI	GCGC	5 cut(s)	29, 42, 83, 85, 495
Kzo9I	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	38, 571
LweI	GCATC	2 cut(s)	283, 810
MaeI	CTAG	4 cut(s)	23, 498, 503, 887
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	6 cut(s)	163, 186, 191, 207, 375, 440
MbiI	CCGCTC	1 cut(s)	699
MboI	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
MboII	GAAGA	6 cut(s)	65, 433, 448, 706, 799, 863
MflI	RGATCY	3 cut(s)	161, 184, 205
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	1 cut(s)	715
MlyI	GAGTC	2 cut(s)	85, 283
MmeI	TCCRAC	3 cut(s)	351, 645, 891
MseI	TTAA	2 cut(s)	530, 898
MspI	CCGG	2 cut(s)	99, 279
MspR9I	CCNGG	2 cut(s)	279, 463
MvaI	CCWGG	1 cut(s)	463
MvnI	CGCG	2 cut(s)	85, 785
MwoI	GCNNNNNNNGC	3 cut(s)	66, 93, 361
NciI	CCSGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
NlaIII	CATG	2 cut(s)	53, 737
NlaIV	GGNNCC	3 cut(s)	19, 460, 865
NmeAIII	GCCGAG	2 cut(s)	830, 849
PauI	GCGCGC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	2 cut(s)	519, 746
PfeI	GAWTC	2 cut(s)	151, 318
PkrI	GCNGC	7 cut(s)	28, 71, 383, 478, 494, 561, 701
PleI	GAGTC	2 cut(s)	85, 283
PpsI	GAGTC	2 cut(s)	85, 283
PshAI	GACNNNNGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	3 cut(s)	19, 460, 865
PstI	CTGCAG	2 cut(s)	184, 844
PsuI	RGATCY	3 cut(s)	161, 184, 205
PteI	GCGCGC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	530, 898
SatI	GCNGC	7 cut(s)	27, 70, 382, 477, 493, 560, 700
Sau3AI	GATC	6 cut(s)	161, 184, 189, 205, 373, 438
SchI	GAGTC	2 cut(s)	85, 283
ScrFI	CCNGG	2 cut(s)	279, 463
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	9 cut(s)	110, 230, 464, 508, 538, 819, 830, 849, 895
SfaNI	GCATC	2 cut(s)	283, 810
SfcI	CTRYAG	2 cut(s)	180, 840
Sse9I	AATT	1 cut(s)	715
SsiI	CCGC	8 cut(s)	60, 70, 298, 381, 476, 492, 699, 743
SspMI	CTAG	4 cut(s)	23, 498, 503, 887
StyD4I	CCNGG	2 cut(s)	277, 461
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	321, 344, 522, 570
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	715
TauI	GCSGC	5 cut(s)	72, 384, 479, 495, 702
TfiI	GAWTC	2 cut(s)	151, 318
Tru1I	TTAA	2 cut(s)	530, 898
Tru9I	TTAA	2 cut(s)	530, 898
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	2 cut(s)	26, 559
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	435
XagI	CCTNNNNNAGG	1 cut(s)	466
XspI	CTAG	4 cut(s)	23, 498, 503, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.