Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Reverse (-)

11095422 .. 11098305

Gene Structure 2884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGAAGGGTCGTCAAGGAGAGCGCGTCAGACTCTACGTCCGTGGAACCGTCCTCGGATACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCCTTGATTCAGATCGAGAACGTGAACACCAAGGAGGAGGTGGCATGGTACGCCGGGAAGCGTTTGGCTTACATTTACAAGGCCAAGGTAAAGAAGAACGGCAGCCACTACCGTTGCATTTGGGGAAAGGTCTCTAGGCCTCATGGAAACACTGGTGTCGTTCGCGCCAAGTTCACCTCCAATCTTCCACCCAAATCCATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

100

Amino Acids

11.44

Weight (kDa)

10.54

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 99	1.6e-40	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 261
AfaI	GTAC	2 cut(s)	86, 146
AhdI	GACNNNNNGTC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	177, 233
ApeKI	GCWGC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	27, 263
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	16, 262
BbvI	GCAGC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	151
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	5 cut(s)	43, 55, 126, 180, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse1I	ACTGG	2 cut(s)	82, 253
Bse8I	GATNNNNATC	1 cut(s)	107
BseDI	CCNNGG	5 cut(s)	43, 55, 126, 180, 294
BseJI	GATNNNNATC	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	82, 253
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	27, 261
BshFI	GGCC	2 cut(s)	179, 235
BsiSI	CCGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	179, 235
Bso31I	GGTCTC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	2 cut(s)	179, 235
BspFNI	CGCG	2 cut(s)	27, 261
BspLI	GGNNCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	82, 253
BssECI	CCNNGG	5 cut(s)	43, 55, 126, 180, 294
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	3 cut(s)	126, 180, 294
Bst4CI	ACNGT	2 cut(s)	52, 209
BstDSI	CCRYGG	2 cut(s)	43, 294
BstFNI	CGCG	2 cut(s)	27, 261
BstHHI	GCGC	2 cut(s)	27, 263
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	27, 261
BstV1I	GCAGC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	179, 235
BtgI	CCRYGG	2 cut(s)	43, 294
BtsIMutI	CAGTG	1 cut(s)	246
CfoI	GCGC	2 cut(s)	27, 263
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	85, 145
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CviAII	CATG	3 cut(s)	141, 239, 295
CviJI	RGCY	4 cut(s)	164, 179, 201, 235
CviKI_1	RGCY	4 cut(s)	164, 179, 201, 235
CviQI	GTAC	2 cut(s)	85, 145
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	3 cut(s)	126, 180, 294
Eco147I	AGGCCT	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	126, 180, 294
ErhI	CCWWGG	3 cut(s)	126, 180, 294
FaeI	CATG	3 cut(s)	144, 242, 298
FaiI	YATR	4 cut(s)	142, 240, 296, 301
FatI	CATG	3 cut(s)	140, 238, 294
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	26, 262
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	179, 235
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	27, 263
Hin1II	CATG	3 cut(s)	144, 242, 298
Hin6I	GCGC	2 cut(s)	25, 261
HinP1I	GCGC	2 cut(s)	25, 261
HinfI	GANTC	2 cut(s)	33, 103
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	16, 262
Hpy166II	GTNNAC	2 cut(s)	121, 270
Hpy188I	TCNGA	3 cut(s)	32, 59, 108
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	121, 270
HpyCH4III	ACNGT	2 cut(s)	52, 209
HpyCH4IV	ACGT	2 cut(s)	39, 117
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	39, 117
Hsp92II	CATG	3 cut(s)	144, 242, 298
HspAI	GCGC	2 cut(s)	25, 261
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	3 cut(s)	95, 163, 234
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	39, 117
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	202, 272
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	60, 65, 124, 127, 246, 283
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	2 cut(s)	27, 261
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	3 cut(s)	144, 242, 298
NlaIV	GGNNCC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	200
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	2 cut(s)	86, 146
RsaNI	GTAC	2 cut(s)	85, 145
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	7 cut(s)	42, 71, 120, 138, 186, 228, 275
SseBI	AGGCCT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	126, 180, 294
TaaI	ACNGT	2 cut(s)	52, 209
TaiI	ACGT	2 cut(s)	42, 120
TaqI	TCGA	3 cut(s)	71, 77, 111
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.