Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003771

Physical Location & Seq

Genomic Coordinates Reverse (-)

36158780 .. 36176519

Gene Structure 17740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGCTGATCAAGAGTAGCCTCCAGAGCCGCCGCCGCTGCTTCATTCGTTCAAAAATAGTGAAGGGTCGTCAAGGAGAGCGCGTCAGACTCTACGTCCGTGGAACCAACCTCGGATACAAGAGGTCGAAGTCGAACCAGTACCCAAACACGTCCTTGATTCAGATCGAGAACGTGAACACCAAGGAGGAGGTGGCATGGTATGCCGGGAAGCGTTTGGGTTACATTTACAAGGCCAAGGTAAAGAAGAACGGCAGCCACTACCGTTGCATTTGGGGAAAGGTCTCTAGGCCTCATGGAAACACTGGTGTCGTTCGCGCCAAGTTCACCTCCAATCTTCCACCCAAATCCATGGACAAGGGTGGTTATGGTGATTTAGCACTCACAGATCCTCCTAGAAGTAGAGGTGTTCAGTTTCCATTTGCTGTGACAGATCGAGTTATCATAAAGGGTAATAAGAGGACACCACAACGCTTTGTTCGGCGTGAGGCAGTTGTGACAACACAATGCTTAAATGGATGGCCCAAGCCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

10.96

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	31 - 119	1.4e-38	Ribosomal protein L35Ae
PUB62-63_C	PF23112	137 - 174	7.6e-21	U-box protein 62/63 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07070 AT1G41880 AT1G41880 AT1G74270 AT3G55750
fragaria_vesca	FvH4_6g12240 FvH4_7g23810 FvH4_7g23810
malus_domestica	MD01G1145400.v1.1 MD04G1144800.v1.1 MD07G1212600.v1.1 MD12G1158700.v1.1
prunus_persica	Prupe.2G244800_v2.0.a1 Prupe.6G269100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369181 RchiOBHm_Chr3g0464041
rosa_laevigata	RLG00000027148
rosa_multiflora	Rmu_co8465513.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287880 Rroxscaffold_6G00416040
rosa_rugosa	Rorug01G0348600.1 Rorug01G0348700 Rorug03G0070300
rosa_samantha	Rh1AG355700 Rh1BG319300 Rh1CG333300 Rh1DG350000 Rh2CG316200 Rh3BG131400 Rh3CG133700 Rh3DG132700 Rh6BG192700
rosa_wichuraiana	Rw1G031390 Rw3G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	84, 318
AciI	CCGC	3 cut(s)	31, 34, 37
AclWI	GGATC	1 cut(s)	383
AfaI	GTAC	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	54
AhdI	GACNNNNNGTC	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	153
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	3 cut(s)	234, 290, 521
ApeKI	GCWGC	2 cut(s)	39, 255
AspLEI	GCGC	2 cut(s)	84, 320
AspS9I	GGNCC	1 cut(s)	522
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	319, 383
BbvI	GCAGC	2 cut(s)	26, 267
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	110
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	288, 396
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	5 cut(s)	31, 34, 37, 40, 256
BlsI	GCNGC	5 cut(s)	32, 35, 38, 41, 257
Bme1390I	CCNGG	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	522
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	5 cut(s)	100, 112, 183, 237, 351
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 376, 406
Bse1I	ACTGG	2 cut(s)	139, 310
Bse8I	GATNNNNATC	1 cut(s)	164
BseDI	CCNNGG	5 cut(s)	100, 112, 183, 237, 351
BseGI	GGATG	1 cut(s)	524
BseJI	GATNNNNATC	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	139, 310
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	26, 267
Bsh1236I	CGCG	2 cut(s)	84, 318
BshFI	GGCC	3 cut(s)	236, 292, 523
BsiSI	CCGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	3 cut(s)	236, 292, 523
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	9, 165, 388, 433
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	3 cut(s)	31, 34, 37
BspANI	GGCC	3 cut(s)	236, 292, 523
BspFNI	CGCG	2 cut(s)	84, 318
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	139, 310
BssECI	CCNNGG	5 cut(s)	100, 112, 183, 237, 351
BssMI	GATC	4 cut(s)	9, 165, 388, 433
BssT1I	CCWWGG	3 cut(s)	183, 237, 351
Bst4CI	ACNGT	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstDSI	CCRYGG	2 cut(s)	100, 351
BstF5I	GGATG	1 cut(s)	524
BstFNI	CGCG	2 cut(s)	84, 318
BstHHI	GCGC	2 cut(s)	84, 320
BstKTI	GATC	4 cut(s)	12, 168, 391, 436
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	4 cut(s)	9, 165, 388, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 39, 203
BstSCI	CCNGG	1 cut(s)	206
BstUI	CGCG	2 cut(s)	84, 318
BstV1I	GCAGC	2 cut(s)	26, 267
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	236, 292, 523
BtgI	CCRYGG	2 cut(s)	100, 351
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	524
BtsIMutI	CAGTG	1 cut(s)	303
CfoI	GCGC	2 cut(s)	84, 320
Cfr13I	GGNCC	1 cut(s)	522
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	248, 283
CviAII	CATG	4 cut(s)	198, 296, 352, 534
CviJI	RGCY	8 cut(s)	7, 21, 30, 236, 258, 292, 523, 529
CviKI_1	RGCY	8 cut(s)	7, 21, 30, 236, 258, 292, 523, 529
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	4 cut(s)	11, 167, 390, 435
DpnII	GATC	4 cut(s)	9, 165, 388, 433
DriI	GACNNNNNGTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	95
Eco130I	CCWWGG	3 cut(s)	183, 237, 351
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	289
EcoT14I	CCWWGG	3 cut(s)	183, 237, 351
ErhI	CCWWGG	3 cut(s)	183, 237, 351
FaeI	CATG	4 cut(s)	201, 299, 355, 537
FaiI	YATR	7 cut(s)	199, 204, 297, 353, 369, 446, 535
FatI	CATG	4 cut(s)	197, 295, 351, 533
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	5 cut(s)	31, 34, 37, 40, 256
FokI	GGATG	1 cut(s)	531
Fsp4HI	GCNGC	5 cut(s)	31, 34, 37, 40, 256
FspBI	CTAG	2 cut(s)	288, 396
GlaI	GCGC	2 cut(s)	83, 319
GluI	GCNGC	5 cut(s)	31, 34, 37, 40, 256
GsuI	CTGGAG	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	236, 292, 523
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	84, 320
Hin1II	CATG	4 cut(s)	201, 299, 355, 537
Hin6I	GCGC	2 cut(s)	82, 318
HinP1I	GCGC	2 cut(s)	82, 318
HinfI	GANTC	2 cut(s)	90, 160
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	319, 383
Hpy166II	GTNNAC	2 cut(s)	178, 327
Hpy188I	TCNGA	3 cut(s)	89, 116, 165
Hpy188III	TCNNGA	3 cut(s)	13, 25, 169
Hpy8I	GTNNAC	2 cut(s)	178, 327
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	3 cut(s)	96, 152, 174
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 39, 203
HpySE526I	ACGT	3 cut(s)	96, 152, 174
Hsp92II	CATG	4 cut(s)	201, 299, 355, 537
HspAI	GCGC	2 cut(s)	82, 318
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 165, 388, 433
LpnPI	CCDG	4 cut(s)	38, 152, 220, 291
Lsp1109I	GCAGC	2 cut(s)	26, 267
MaeI	CTAG	2 cut(s)	288, 396
MaeII	ACGT	3 cut(s)	96, 152, 174
MaeIII	GTNAC	3 cut(s)	221, 427, 496
MalI	GATC	4 cut(s)	11, 167, 390, 435
MboI	GATC	4 cut(s)	9, 165, 388, 433
MboII	GAAGA	2 cut(s)	259, 329
MflI	RGATCY	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	208
MvnI	CGCG	2 cut(s)	84, 318
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 39, 203
NciI	CCSGG	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	4 cut(s)	9, 165, 388, 433
NlaIII	CATG	4 cut(s)	201, 299, 355, 537
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	427, 496
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	32, 35, 38, 41, 257
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	5 cut(s)	31, 34, 37, 40, 256
Sau3AI	GATC	4 cut(s)	9, 165, 388, 433
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	208
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	31, 34, 37
SspMI	CTAG	2 cut(s)	288, 396
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	3 cut(s)	183, 237, 351
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	3 cut(s)	99, 155, 177
TaqI	TCGA	4 cut(s)	128, 134, 168, 436
TauI	GCSGC	3 cut(s)	33, 36, 39
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	427, 496
TseI	GCWGC	2 cut(s)	39, 255
Tsp45I	GTSAC	2 cut(s)	427, 496
TspDTI	ATGAA	2 cut(s)	17, 34
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	288, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.