Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

2184759 .. 2186627

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTTACCTAATGGAGAAGATGATTCAGATCTCCTGCGTCTGGTGAAGGAGCTTCAAGCCTATCTAGTGAGGAACGATAAGCTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCCCGTCTAAGAGCACAAGTAAGCAATCTTAAATCACATGAAAATGAGAGGAAATCAATGCTATGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAACCTGAAAGCGCCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCCAAATCCCAAGCCAACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACCACTTCCATCAAAGAGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGAGTTTTATCGTGCCCTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGGAGTTTTGTCGCCTGCATTCAACAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATTAAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAAGTGGAAGCTGCAACATTTACAGACATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTATCTTCCTTGGTAGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAAGTAGATTCACTAAGAGAGGCTGCTTGCAATTACAAAAGGCCAAAGAACCTTGGAAATGAGATTTTGTCATTCAAGGACAATCCAAAAGATTCTCTGACGCAGGCCTTGCAAAGGATTCAATCGTTGCAAGACAGGTTAGAGGAAAGTGTTAACAACACAGAGAAGATGAGAGACAGTACAGGGAAAAGATACAAGGATTTTCAGATACCTTGGGAGTGGATGCTCGACACAGGACTGATTGGACAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAATAGCGAAGGAGCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGATTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGATGGAGAAACATTAAGCATATTTCACGAGCTAAAGAAGATCACTACAGGTGAAACCAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

392

Amino Acids

44.93

Weight (kDa)

9.29

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	3 cut(s)	332, 385, 1107
AclWI	GGATC	2 cut(s)	232, 298
AcoI	YGGCCR	1 cut(s)	707
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	2 cut(s)	40, 831
AgsI	TTSAA	5 cut(s)	56, 487, 793, 839, 1067
Alw21I	GWGCWC	3 cut(s)	133, 200, 394
Alw26I	GTCTC	3 cut(s)	441, 623, 885
AlwI	GGATC	2 cut(s)	232, 298
AoxI	GGCC	3 cut(s)	707, 758, 822
ApeKI	GCWGC	4 cut(s)	103, 210, 599, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	3 cut(s)	55, 515, 1175
AsuNHI	GCTAGC	1 cut(s)	988
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	709
BanII	GRGCYC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	1139
Bbv12I	GWGCWC	3 cut(s)	133, 200, 394
BbvCI	CCTCAGC	1 cut(s)	983
BbvI	GCAGC	4 cut(s)	90, 222, 586, 727
BccI	CCATC	3 cut(s)	200, 361, 1109
BcoDI	GTCTC	3 cut(s)	441, 623, 885
BfaI	CTAG	2 cut(s)	65, 989
BfmI	CTRYAG	2 cut(s)	318, 1158
BfoI	RGCGCY	1 cut(s)	242
BglII	AGATCT	2 cut(s)	28, 377
BisI	GCNGC	6 cut(s)	104, 211, 332, 386, 600, 741
BlsI	GCNGC	6 cut(s)	105, 212, 333, 387, 601, 742
BmsI	GCATC	1 cut(s)	930
BmtI	GCTAGC	1 cut(s)	992
BplI	GAGNNNNNCTC	6 cut(s)	421, 453, 503, 535, 976, 1008
BpmI	CTGGAG	2 cut(s)	104, 378
Bpu10I	CCTNAGC	2 cut(s)	983, 993
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	307, 666, 769, 929
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 831
Bse1I	ACTGG	1 cut(s)	1096
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	4 cut(s)	307, 666, 769, 929
BseGI	GGATG	1 cut(s)	945
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	40, 831
BseMII	CTCAG	2 cut(s)	974, 1007
BseNI	ACTGG	1 cut(s)	1096
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	4 cut(s)	90, 222, 586, 727
BshFI	GGCC	3 cut(s)	709, 760, 824
BsiHKAI	GWGCWC	3 cut(s)	133, 200, 394
BslI	CCNNNNNNNGG	2 cut(s)	40, 831
BsmAI	GTCTC	3 cut(s)	441, 623, 885
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	3 cut(s)	709, 760, 824
Bsp1286I	GDGCHC	4 cut(s)	133, 200, 394, 421
Bsp143I	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
BspACI	CCGC	3 cut(s)	332, 385, 1107
BspANI	GGCC	3 cut(s)	709, 760, 824
BspCNI	CTCAG	2 cut(s)	975, 1006
BspHI	TCATGA	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	992
BspPI	GGATC	2 cut(s)	232, 298
BsrI	ACTGG	1 cut(s)	1096
BssECI	CCNNGG	4 cut(s)	307, 666, 769, 929
BssMI	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
BssSI	CACGAG	1 cut(s)	1139
BssT1I	CCWWGG	4 cut(s)	307, 666, 769, 929
Bst2BI	CACGAG	1 cut(s)	1139
Bst4CI	ACNGT	1 cut(s)	896
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	826
BstC8I	GCNNGC	7 cut(s)	390, 480, 745, 822, 980, 990, 1105
BstDEI	CTNAG	4 cut(s)	125, 731, 983, 993
BstENI	CCTNNNNNAGG	1 cut(s)	829
BstF5I	GGATG	1 cut(s)	945
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	7 cut(s)	31, 227, 306, 380, 456, 568, 1155
BstMAI	GTCTC	3 cut(s)	441, 623, 885
BstMBI	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstSFI	CTRYAG	2 cut(s)	318, 1158
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	90, 222, 586, 727
BstX2I	RGATCY	3 cut(s)	28, 224, 377
BstXI	CCANNNNNNTGG	1 cut(s)	1103
BstYI	RGATCY	3 cut(s)	28, 224, 377
BsuRI	GGCC	3 cut(s)	709, 760, 824
BtsCI	GGATG	1 cut(s)	945
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	7 cut(s)	390, 480, 745, 822, 980, 990, 1105
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	1 cut(s)	241
CseI	GACGC	3 cut(s)	26, 95, 826
Csp6I	GTAC	1 cut(s)	897
CviAII	CATG	3 cut(s)	98, 155, 496
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	4 cut(s)	125, 731, 983, 993
DpnI	GATC	7 cut(s)	30, 226, 305, 379, 455, 567, 1154
DpnII	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
EaeI	YGGCCR	1 cut(s)	707
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	4 cut(s)	307, 666, 769, 929
Eco147I	AGGCCT	1 cut(s)	824
Eco24I	GRGCYC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	829
EcoT14I	CCWWGG	4 cut(s)	307, 666, 769, 929
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	4 cut(s)	307, 666, 769, 929
FaeI	CATG	3 cut(s)	101, 158, 499
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FatI	CATG	3 cut(s)	97, 154, 495
FauNDI	CATATG	2 cut(s)	202, 441
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	6 cut(s)	104, 211, 332, 386, 600, 741
FokI	GGATG	1 cut(s)	952
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	6 cut(s)	104, 211, 332, 386, 600, 741
FspBI	CTAG	2 cut(s)	65, 989
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	6 cut(s)	104, 211, 332, 386, 600, 741
GsuI	CTGGAG	2 cut(s)	104, 378
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	709, 760, 824
HgaI	GACGC	3 cut(s)	26, 95, 826
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	3 cut(s)	101, 158, 499
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	7 cut(s)	23, 434, 514, 725, 809, 835, 1028
HpaI	GTTAAC	1 cut(s)	871
HphI	GGTGA	3 cut(s)	55, 515, 1175
Hpy166II	GTNNAC	2 cut(s)	318, 871
Hpy188I	TCNGA	8 cut(s)	28, 281, 462, 535, 547, 622, 816, 924
Hpy188III	TCNNGA	8 cut(s)	98, 110, 272, 395, 511, 580, 995, 1139
Hpy8I	GTNNAC	2 cut(s)	318, 871
HpyAV	CCTTC	4 cut(s)	40, 82, 1012, 1043
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4V	TGCA	6 cut(s)	193, 482, 602, 747, 829, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	4 cut(s)	125, 731, 983, 993
Hsp92II	CATG	3 cut(s)	101, 158, 499
HspAI	GCGC	1 cut(s)	239
KspAI	GTTAAC	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
LmnI	GCTCC	4 cut(s)	49, 397, 524, 1021
Lsp1109I	GCAGC	4 cut(s)	90, 222, 586, 727
LweI	GCATC	1 cut(s)	930
MaeI	CTAG	2 cut(s)	65, 989
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	7 cut(s)	30, 226, 305, 379, 455, 567, 1154
MboI	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
MboII	GAAGA	7 cut(s)	29, 196, 439, 654, 665, 895, 1162
MflI	RGATCY	3 cut(s)	28, 224, 377
MhlI	GDGCHC	4 cut(s)	133, 200, 394, 421
MlsI	TGGCCA	1 cut(s)	709
MluCI	AATT	1 cut(s)	748
MluNI	TGGCCA	1 cut(s)	709
MlyI	GAGTC	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	63, 159, 268, 351, 730, 853, 978, 1166
Mox20I	TGGCCA	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	709
MseI	TTAA	4 cut(s)	147, 540, 870, 1127
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	709
Mva1269I	GAATGC	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	826
NdeI	CATATG	2 cut(s)	202, 441
NdeII	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
NheI	GCTAGC	1 cut(s)	988
NlaIII	CATG	3 cut(s)	101, 158, 499
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	824
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	6 cut(s)	23, 514, 725, 809, 835, 1028
PkrI	GCNGC	6 cut(s)	105, 212, 333, 387, 601, 742
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	200
PsuI	RGATCY	3 cut(s)	28, 224, 377
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
RseI	CAYNNNNRTG	1 cut(s)	159
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	147, 540, 870, 1127
SatI	GCNGC	6 cut(s)	104, 211, 332, 386, 600, 741
Sau3AI	GATC	7 cut(s)	28, 224, 303, 377, 453, 565, 1152
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	4 cut(s)	133, 200, 394, 421
SfaNI	GCATC	1 cut(s)	930
SfcI	CTRYAG	2 cut(s)	318, 1158
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	748
SseBI	AGGCCT	1 cut(s)	824
SsiI	CCGC	3 cut(s)	332, 385, 1107
SspMI	CTAG	2 cut(s)	65, 989
SstI	GAGCTC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	824
StyI	CCWWGG	4 cut(s)	307, 666, 769, 929
TaaI	ACNGT	1 cut(s)	896
TaqI	TCGA	3 cut(s)	510, 945, 1075
TasI	AATT	1 cut(s)	748
TatI	WGTACW	1 cut(s)	896
TauI	GCSGC	2 cut(s)	334, 388
TfiI	GAWTC	6 cut(s)	23, 514, 725, 809, 835, 1028
Tru1I	TTAA	4 cut(s)	147, 540, 870, 1127
Tru9I	TTAA	4 cut(s)	147, 540, 870, 1127
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	4 cut(s)	103, 210, 599, 740
TspDTI	ATGAA	3 cut(s)	171, 690, 1019
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	556
XagI	CCTNNNNNAGG	1 cut(s)	829
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	2 cut(s)	65, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.