Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

5923507 .. 5925966

Gene Structure 2460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1069000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGCCAGAAGAAGATGAAAGCTCCGAGATCGTCGTCTTTCTCAGGAAAGAACTCGAAGCCTCTCTCGAAAAGAACGGCTCGTTGGAGAAAGAAAACCATGAACTGAAGCAAGAAGTTGGTCGTCTTAAAGCTCAAATAACTTCCCTCAAAGCACACAACAATGAGAGGAAATCTGTGCTCTGGAAGAAGTTTCAAAGCACGTTGGAGCACAGTGCATTGGAGCAGAGTCCAGTGAAAGAGAAACCGAATCCGAAAGTAGACTTCACGGAATCTCAAGCCATAAAGGAAAGACCGGCAGCAGGATTATTACCAACCAATGCAACACCATCAACACCGAGGCCTCCTCCTCCTCCCCCTGCTTTGTTCAAGGAGGTAAAGGAAAATAAAGGGCCTTCAGCACTAGCACCGCCTCCTCCTCCTCCGCCCTCAAAATCATTAATCGGGTCAAGAGGAGTGCGACGTGTGCCGGAAGTAATTGAGCTGTACCGTTCACTTACAAGGAAAGATGCACACATGGAGAACAAAGCCAACCCAGCAGGAGTTCATGCTTTTGCACTTACTAAGAACATGATCGGAGAAATCGAAAACCGTTCATCTTATGTTTTAGCAATAAAGTCGGAGGTCGAAACGCAAGGAGAATTCATAAATTTCTTGATCAGTGAGGTGGAGTCTTCAAAATTTACAAACATCGCAGACGTGGAAGCATTTGTAAATTGGCTGGATCGGCAACTATCTTCTTTAGTGGATGAAAGAGCAGTGCTGAAGCACTTCCCGCAGTGGCCGGAACGAAAAGCAGACACGCTGCGAGAAGCCGCCTTCAGCTACAGAGACCTGAGGAATCTGAAAAACGAAGCCTCATCATTTGAGGACAACATGAAGGAGCCATCAATCCTTGCTCTGAGAAGAATGGAGGCATTACAAGACAGGTTGGAAAGAAGTGTGAGCAGCACAGAAAGAACAAGGGAGAGTGCCAGCAAGAGGTACAGGGATTTTCAGATCCCATGGGAATGGATGCTGGACACAGGGGTGATGGGTCAGATGAAACTGAGCTCACTGAGGCTAGCCAAGGAGTACATGAAGAGGATTACTAGAGAAGTGCAGTCCAGTGAATGCTCAAGAGAAGAAAATCTCCTGCTTCAAGGCGTCCGATTCGCTTTCCGGGTACACCAGTTTGCAGGTGGTTTTGATTCGGAGACGGTACTTGCATTTGAGGAACTAAAGAAGATAGGCGCGAATAGTAGAAGAAATGGCACGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

47.64

Weight (kDa)

8.68

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1166
Acc36I	ACCTGC	1 cut(s)	1166
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	1232
AciI	CCGC	4 cut(s)	407, 422, 773, 813
AclWI	GGATC	2 cut(s)	729, 991
AcoI	YGGCCR	1 cut(s)	779
AcsI	RAATTY	3 cut(s)	638, 646, 677
AcuI	CTGAAG	4 cut(s)	125, 378, 782, 802
AcyI	GRCGYC	1 cut(s)	1143
AfaI	GTAC	5 cut(s)	485, 983, 1073, 1164, 1200
AfiI	CCNNNNNNNGG	2 cut(s)	299, 978
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	194, 367, 675, 1139
AjiI	CACGTC	2 cut(s)	461, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	1025
AluBI	AGCT	5 cut(s)	21, 131, 481, 822, 1050
AluI	AGCT	5 cut(s)	21, 131, 481, 822, 1050
Alw21I	GWGCWC	3 cut(s)	180, 210, 1052
Alw26I	GTCTC	2 cut(s)	822, 1187
AlwI	GGATC	2 cut(s)	729, 991
AoxI	GGCC	3 cut(s)	338, 389, 779
ApeKI	GCWGC	3 cut(s)	296, 802, 945
ApoI	RAATTY	3 cut(s)	638, 646, 677
AseI	ATTAAT	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	767
AspLEI	GCGC	1 cut(s)	1232
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	1160
AsuHPI	GGTGA	1 cut(s)	1039
AsuNHI	GCTAGC	1 cut(s)	1060
AxyI	CCTNAGG	1 cut(s)	833
BaeI	ACNNNNGTAYC	2 cut(s)	1154, 1187
BanII	GRGCYC	1 cut(s)	1052
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	3 cut(s)	180, 210, 1052
BbvI	GCAGC	3 cut(s)	308, 789, 957
BccI	CCATC	3 cut(s)	334, 892, 1024
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	597, 631
BclI	TGATCA	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	1160
BcoDI	GTCTC	2 cut(s)	822, 1187
BfaI	CTAG	3 cut(s)	401, 1061, 1089
BfmI	CTRYAG	1 cut(s)	823
BfuAI	ACCTGC	1 cut(s)	1166
BisI	GCNGC	4 cut(s)	297, 803, 813, 946
BlsI	GCNGC	4 cut(s)	298, 804, 814, 947
Bme1390I	CCNGG	1 cut(s)	1160
BmgBI	CACGTC	2 cut(s)	461, 697
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	1 cut(s)	1160
BmsI	GCATC	2 cut(s)	496, 1002
BmtI	GCTAGC	1 cut(s)	1064
BpiI	GAAGAC	1 cut(s)	663
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
BpuEI	CTTGAG	2 cut(s)	258, 1099
BpuMI	CCSGG	1 cut(s)	1160
BsaHI	GRCGYC	1 cut(s)	1143
BsaI	GGTCTC	1 cut(s)	822
BsaJI	CCNNGG	3 cut(s)	335, 1001, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 978
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	3 cut(s)	230, 1104, 1168
Bse21I	CCTNAGG	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	335, 1001, 1065
BseGI	GGATG	2 cut(s)	751, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	299, 978
BseMII	CTCAG	5 cut(s)	55, 824, 890, 1037, 1046
BseNI	ACTGG	3 cut(s)	230, 1104, 1168
BseRI	GAGGAG	7 cut(s)	333, 336, 339, 402, 405, 408, 465
BseXI	GCAGC	3 cut(s)	308, 789, 957
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	1118
Bsh1236I	CGCG	1 cut(s)	1232
BshFI	GGCC	3 cut(s)	340, 391, 781
BsiHKAI	GWGCWC	3 cut(s)	180, 210, 1052
BsiSI	CCGG	4 cut(s)	293, 467, 782, 1159
BslI	CCNNNNNNNGG	2 cut(s)	299, 978
BsmAI	GTCTC	2 cut(s)	822, 1187
BsmBI	CGTCTC	1 cut(s)	1187
BsmI	GAATGC	1 cut(s)	1115
BsnI	GGCC	3 cut(s)	340, 391, 781
Bso31I	GGTCTC	1 cut(s)	822
Bsp1286I	GDGCHC	3 cut(s)	180, 210, 1052
Bsp143I	GATC	5 cut(s)	27, 570, 654, 721, 996
Bsp19I	CCATGG	1 cut(s)	1001
BspACI	CCGC	4 cut(s)	407, 422, 773, 813
BspANI	GGCC	3 cut(s)	340, 391, 781
BspCNI	CTCAG	5 cut(s)	54, 825, 891, 1038, 1047
BspFNI	CGCG	1 cut(s)	1232
BspLI	GGNNCC	1 cut(s)	882
BspMI	ACCTGC	1 cut(s)	1166
BspOI	GCTAGC	1 cut(s)	1064
BspPI	GGATC	2 cut(s)	729, 991
BspTNI	GGTCTC	1 cut(s)	822
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	3 cut(s)	230, 1104, 1168
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	335, 1001, 1065
BssMI	GATC	5 cut(s)	27, 570, 654, 721, 996
BssNI	GRCGYC	1 cut(s)	1143
BssT1I	CCWWGG	2 cut(s)	1001, 1065
Bst4CI	ACNGT	4 cut(s)	212, 488, 590, 1198
Bst6I	CTCTTC	1 cut(s)	1073
BstACI	GRCGYC	1 cut(s)	1143
BstC8I	GCNNGC	2 cut(s)	973, 1062
BstDEI	CTNAG	6 cut(s)	41, 561, 833, 899, 1046, 1055
BstDSI	CCRYGG	1 cut(s)	1001
BstF5I	GGATG	2 cut(s)	751, 1017
BstFNI	CGCG	1 cut(s)	1232
BstHHI	GCGC	1 cut(s)	1232
BstKTI	GATC	5 cut(s)	30, 573, 657, 724, 999
BstMAI	GTCTC	2 cut(s)	822, 1187
BstMBI	GATC	5 cut(s)	27, 570, 654, 721, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	463, 533, 724, 772
BstSCI	CCNGG	1 cut(s)	1158
BstSFI	CTRYAG	1 cut(s)	823
BstUI	CGCG	1 cut(s)	1232
BstV1I	GCAGC	3 cut(s)	308, 789, 957
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	996
BstXI	CCANNNNNNTGG	1 cut(s)	1008
BstYI	RGATCY	1 cut(s)	996
Bsu36I	CCTNAGG	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	340, 391, 781
BtgI	CCRYGG	1 cut(s)	1001
BtgZI	GCGATG	1 cut(s)	673
BtrI	CACGTC	2 cut(s)	461, 697
BtsCI	GGATG	2 cut(s)	751, 1017
BtsI	GCAGTG	2 cut(s)	762, 782
BtsIMutI	CAGTG	7 cut(s)	217, 237, 664, 762, 782, 1052, 1111
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	2 cut(s)	973, 1062
CfoI	GCGC	1 cut(s)	1232
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	1132
Csp6I	GTAC	5 cut(s)	484, 982, 1072, 1163, 1199
CviAII	CATG	7 cut(s)	98, 514, 545, 568, 874, 1002, 1075
CviQI	GTAC	5 cut(s)	484, 982, 1072, 1163, 1199
DdeI	CTNAG	6 cut(s)	41, 561, 833, 899, 1046, 1055
DpnI	GATC	5 cut(s)	29, 572, 656, 723, 998
DpnII	GATC	5 cut(s)	27, 570, 654, 721, 996
EaeI	YGGCCR	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	1073
EciI	GGCGGA	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	1050
Eco130I	CCWWGG	2 cut(s)	1001, 1065
Eco147I	AGGCCT	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	1052
Eco31I	GGTCTC	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	1050
Eco57I	CTGAAG	4 cut(s)	125, 378, 782, 802
Eco81I	CCTNAGG	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	1050
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	638
EcoT14I	CCWWGG	2 cut(s)	1001, 1065
EcoT38I	GRGCYC	1 cut(s)	1052
ErhI	CCWWGG	2 cut(s)	1001, 1065
Esp3I	CGTCTC	1 cut(s)	1187
FaeI	CATG	7 cut(s)	101, 517, 548, 571, 877, 1005, 1078
FatI	CATG	7 cut(s)	97, 513, 544, 567, 873, 1001, 1074
FauI	CCCGC	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	654
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	297, 803, 813, 946
FokI	GGATG	2 cut(s)	758, 1024
FriOI	GRGCYC	1 cut(s)	1052
Fsp4HI	GCNGC	4 cut(s)	297, 803, 813, 946
FspBI	CTAG	3 cut(s)	401, 1061, 1089
GlaI	GCGC	1 cut(s)	1231
GluI	GCNGC	4 cut(s)	297, 803, 813, 946
GsaI	CCCAGC	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	340, 391, 781
HapII	CCGG	4 cut(s)	293, 467, 782, 1159
HgaI	GACGC	1 cut(s)	1132
HhaI	GCGC	1 cut(s)	1232
Hin1I	GRCGYC	1 cut(s)	1143
Hin1II	CATG	7 cut(s)	101, 517, 548, 571, 877, 1005, 1078
Hin6I	GCGC	1 cut(s)	1230
HinP1I	GCGC	1 cut(s)	1230
HinfI	GANTC	7 cut(s)	226, 247, 269, 668, 838, 1149, 1187
HpaII	CCGG	4 cut(s)	293, 467, 782, 1159
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	3 cut(s)	259, 491, 1165
Hpy188III	TCNNGA	6 cut(s)	43, 65, 181, 447, 652, 1116
Hpy8I	GTNNAC	3 cut(s)	259, 491, 1165
Hpy99I	CGWCG	2 cut(s)	35, 462
HpyAV	CCTTC	3 cut(s)	402, 826, 871
HpyCH4III	ACNGT	4 cut(s)	212, 488, 590, 1198
HpyCH4IV	ACGT	3 cut(s)	200, 460, 696
HpyCH4V	TGCA	7 cut(s)	215, 320, 509, 554, 1099, 1175, 1205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	463, 533, 724, 772
HpyF3I	CTNAG	6 cut(s)	41, 561, 833, 899, 1046, 1055
HpySE526I	ACGT	3 cut(s)	200, 460, 696
Hsp92I	GRCGYC	1 cut(s)	1143
Hsp92II	CATG	7 cut(s)	101, 517, 548, 571, 877, 1005, 1078
HspAI	GCGC	1 cut(s)	1230
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	27, 570, 654, 721, 996
LmnI	GCTCC	4 cut(s)	26, 205, 220, 880
Lsp1109I	GCAGC	3 cut(s)	308, 789, 957
LweI	GCATC	2 cut(s)	496, 1002
MaeI	CTAG	3 cut(s)	401, 1061, 1089
MaeII	ACGT	3 cut(s)	200, 460, 696
MalI	GATC	5 cut(s)	29, 572, 656, 723, 998
MboI	GATC	5 cut(s)	27, 570, 654, 721, 996
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	3 cut(s)	180, 210, 1052
MluCI	AATT	5 cut(s)	474, 638, 646, 677, 712
MlyI	GAGTC	2 cut(s)	235, 677
MmeI	TCCRAC	4 cut(s)	63, 183, 597, 909
MroXI	GAANNNNTTC	1 cut(s)	767
MseI	TTAA	2 cut(s)	126, 437
MslI	CAYNNNNRTG	3 cut(s)	159, 1006, 1025
MspI	CCGG	4 cut(s)	293, 467, 782, 1159
MspR9I	CCNGG	1 cut(s)	1160
Mva1269I	GAATGC	1 cut(s)	1115
MvnI	CGCG	1 cut(s)	1232
MwoI	GCNNNNNNNGC	4 cut(s)	463, 533, 724, 772
NciI	CCSGG	1 cut(s)	1160
NcoI	CCATGG	1 cut(s)	1001
NdeII	GATC	5 cut(s)	27, 570, 654, 721, 996
NheI	GCTAGC	1 cut(s)	1060
NlaIII	CATG	7 cut(s)	101, 517, 548, 571, 877, 1005, 1078
NlaIV	GGNNCC	1 cut(s)	882
OliI	CACNNNNGTG	1 cut(s)	1025
PaqCI	CACCTGC	1 cut(s)	1166
PceI	AGGCCT	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	1115
PdmI	GAANNNNTTC	1 cut(s)	767
PfeI	GAWTC	5 cut(s)	247, 269, 838, 1149, 1187
PkrI	GCNGC	4 cut(s)	298, 804, 814, 947
PleI	GAGTC	2 cut(s)	234, 676
PpsI	GAGTC	2 cut(s)	234, 676
PshBI	ATTAAT	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	1052
PspFI	CCCAGC	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	996
RsaI	GTAC	5 cut(s)	485, 983, 1073, 1164, 1200
RsaNI	GTAC	5 cut(s)	484, 982, 1072, 1163, 1199
RseI	CAYNNNNRTG	3 cut(s)	159, 1006, 1025
SacI	GAGCTC	1 cut(s)	1052
SaqAI	TTAA	2 cut(s)	126, 437
SatI	GCNGC	4 cut(s)	297, 803, 813, 946
Sau3AI	GATC	5 cut(s)	27, 570, 654, 721, 996
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	235, 677
ScrFI	CCNGG	1 cut(s)	1160
SduI	GDGCHC	3 cut(s)	180, 210, 1052
SfaNI	GCATC	2 cut(s)	496, 1002
SfcI	CTRYAG	1 cut(s)	823
SmiMI	CAYNNNNRTG	3 cut(s)	159, 1006, 1025
SmlI	CTYRAG	2 cut(s)	273, 1114
SmoI	CTYRAG	2 cut(s)	273, 1114
Sse9I	AATT	5 cut(s)	474, 638, 646, 677, 712
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	407, 422, 773, 813
SspMI	CTAG	3 cut(s)	401, 1061, 1089
SstI	GAGCTC	1 cut(s)	1052
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	1158
StyI	CCWWGG	2 cut(s)	1001, 1065
TaaI	ACNGT	4 cut(s)	212, 488, 590, 1198
TaiI	ACGT	3 cut(s)	203, 463, 699
TaqI	TCGA	4 cut(s)	54, 66, 582, 624
TasI	AATT	5 cut(s)	474, 638, 646, 677, 712
TatI	WGTACW	1 cut(s)	1071
TauI	GCSGC	1 cut(s)	815
TfiI	GAWTC	5 cut(s)	247, 269, 838, 1149, 1187
Tru1I	TTAA	2 cut(s)	126, 437
Tru9I	TTAA	2 cut(s)	126, 437
TscAI	CASTG	7 cut(s)	217, 237, 664, 762, 782, 1059, 1111
TseI	GCWGC	3 cut(s)	296, 802, 945
TspDTI	ATGAA	9 cut(s)	30, 114, 533, 582, 631, 762, 890, 1055, 1091
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	7 cut(s)	217, 237, 664, 762, 782, 1059, 1111
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	3 cut(s)	638, 646, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1175
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	767
XspI	CTAG	3 cut(s)	401, 1061, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.