Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

4036268 .. 4038876

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTTAATGTACAATTGTTCCAGCAACTCATTTGCCACATCTTCCTATCTCCTTCCACTGAAAGCACAGCAGACTAGGAGGATGCCAGAAGAAGCTGAAAGCTCCGAGATCGTCGTCTTTCTCACGAAAGAACTCGAAGCCTCTCTCGAAAAGAACGGCTCGTTGGAGAAAGAAAACCATGAGTTGAGGCAAGAAGTTGGTCGTCTCAAAGCTCAAATAACTTCCCTCAAAGCACACAACAATGAGAGGAAATCTGTGCTCTGGAAGAAGTTTCAAAGCACATTGGAGCAGACTCAAGCGACAGAGAAACCGAATCCGAAAGTAGACTTCACAGAGTCAGAAGCCACAAAGGAAAGATCGGCAGCAAGATTGTTACCAACCAATGCACCACCACCAACGCCAAGGCCTCCCCTTCCTCCTACTTTGTTCAAGGAGGTAAAGGAAAACAAAGGGCCGTCAGCACCAGCACCGCCGCCTCCTCCTCCGCCCTCAAAAGCATTAATCGGGTCAAGAGGAGTGCGACGTGTTCCGGAAGTGATTGAGCTGTACCGTTCACTTACAAGGAAAGATGCACACATGGAGAACAAGGCCAACCCTGCAGGAGTTCATGTTTTTGCACTTACTAAGAACATGATCGGAGAAATCGAAAACCGTTCATCTTACGTTTTAGCTATAAAGTCGGAGGTCGAAACGCAAGGAGAGTTCGTAAACTTTTTGATCAGTGAGGTCGAGTTTGCAAAATTTACAAACATTGCAGATGTGGAAGCATTTGTGAACTGGCTGGATCGGCAGCTATCTTCTTTAGTCGATGAGAGAGCAGTGCTGAAGCACTTCCCGCAGTGGCCGGAACGAAAGGCGGACACGCTGCGAGAAGCCGCTTTCAGCTACAGAGACCTGAGGAATCTGAAAAACGAAGCCTCATCATTTGAGGACAACCTGAAGGAGCCATCAATCCTTGCTCTGAGAAGAATGGAAGCATTACAAGACAGGTTGGAAAGAAGTGTGAGCAGCACAGAAAGAACAAGGGAGAGTGCCAGCAAGAGATACAGGGATTTTCAGATCCCATGGGAGTGGATGCTGGACACAGGGCTGATGGGTCAGATGAAACTGAGCTCACTAAGGCTAGCCAAGGAATACATGAAGAGGATTATTAGAGACGTGGAGTCTAGCGAATGTCCAAGAGAAGAAAGTCTCCTGCTTCAAGGAGTCCGTTTCGCTTTCCGGGTACACCAGGTAGTGAAGCCCTTCACAAACGCGGTTCCAAATTTCTATTTGCAGGTGGTTTTGATTCGGAGACGGTTCTCGCGTTCGAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

440

Amino Acids

50.4

Weight (kDa)

9.45

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1267
Acc36I	ACCTGC	1 cut(s)	1267
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	2 cut(s)	1256, 1306
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	7 cut(s)	470, 473, 485, 836, 857, 876, 1256
AclWI	GGATC	2 cut(s)	792, 1054
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	740, 1264
AcuI	CTGAAG	2 cut(s)	845, 959
AfaI	GTAC	3 cut(s)	11, 548, 1227
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	275, 430, 1202
AhdI	GACNNNNNGTC	1 cut(s)	1162
AjiI	CACGTC	2 cut(s)	524, 1159
AjnI	CCWGG	1 cut(s)	1230
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	8 cut(s)	95, 102, 212, 544, 671, 793, 885, 1113
AluI	AGCT	8 cut(s)	95, 102, 212, 544, 671, 793, 885, 1113
Alw21I	GWGCWC	2 cut(s)	261, 1115
Alw26I	GTCTC	5 cut(s)	209, 885, 1149, 1196, 1288
AlwI	GGATC	2 cut(s)	792, 1054
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	4 cut(s)	404, 452, 588, 842
ApeKI	GCWGC	4 cut(s)	362, 790, 865, 1008
ApoI	RAATTY	2 cut(s)	740, 1264
AseI	ATTAAT	1 cut(s)	500
Asp700I	GAANNNNTTC	2 cut(s)	830, 1244
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	1223
AsuNHI	GCTAGC	1 cut(s)	1123
AxyI	CCTNAGG	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	1115
Bbv12I	GWGCWC	2 cut(s)	261, 1115
BbvI	GCAGC	4 cut(s)	374, 802, 852, 1020
BccI	CCATC	2 cut(s)	955, 1087
BceAI	ACGGC	2 cut(s)	172, 439
BciT130I	CCWGG	1 cut(s)	1232
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	1223
BcoDI	GTCTC	5 cut(s)	209, 885, 1149, 1196, 1288
BfaI	CTAG	3 cut(s)	75, 1124, 1167
BfmI	CTRYAG	2 cut(s)	597, 886
BfuAI	ACCTGC	1 cut(s)	1267
BisI	GCNGC	6 cut(s)	363, 473, 791, 866, 876, 1009
BlsI	GCNGC	6 cut(s)	364, 474, 792, 867, 877, 1010
Bme1390I	CCNGG	2 cut(s)	1223, 1232
BmeRI	GACNNNNNGTC	1 cut(s)	1162
BmgBI	CACGTC	2 cut(s)	524, 1159
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	945, 1260
BmrFI	CCNGG	2 cut(s)	1223, 1232
BmsI	GCATC	3 cut(s)	72, 559, 1065
BmtI	GCTAGC	1 cut(s)	1127
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	1223
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	3 cut(s)	401, 1064, 1128
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	594, 624, 690, 720
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	1232
BseDI	CCNNGG	3 cut(s)	401, 1064, 1128
BseGI	GGATG	2 cut(s)	87, 1080
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	3 cut(s)	887, 953, 1100
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	3 cut(s)	468, 471, 528
BseXI	GCAGC	4 cut(s)	374, 802, 852, 1020
Bsh1236I	CGCG	2 cut(s)	1256, 1306
BshFI	GGCC	4 cut(s)	406, 454, 590, 844
BsiHKAI	GWGCWC	2 cut(s)	261, 1115
BsiSI	CCGG	3 cut(s)	530, 845, 1222
BsmAI	GTCTC	5 cut(s)	209, 885, 1149, 1196, 1288
BsmBI	CGTCTC	3 cut(s)	209, 1149, 1288
BsnI	GGCC	4 cut(s)	406, 454, 590, 844
Bso31I	GGTCTC	1 cut(s)	885
Bsp1286I	GDGCHC	2 cut(s)	261, 1115
Bsp13I	TCCGGA	1 cut(s)	529
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
Bsp19I	CCATGG	1 cut(s)	1064
BspACI	CCGC	7 cut(s)	470, 473, 485, 836, 857, 876, 1256
BspANI	GGCC	4 cut(s)	406, 454, 590, 844
BspCNI	CTCAG	3 cut(s)	888, 954, 1101
BspEI	TCCGGA	1 cut(s)	529
BspFNI	CGCG	2 cut(s)	1256, 1306
BspLI	GGNNCC	2 cut(s)	945, 1260
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	1267
BspOI	GCTAGC	1 cut(s)	1127
BspPI	GGATC	2 cut(s)	792, 1054
BspTNI	GGTCTC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	750
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	3 cut(s)	401, 1064, 1128
BssMI	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
BssT1I	CCWWGG	3 cut(s)	401, 1064, 1128
Bst2UI	CCWGG	1 cut(s)	1232
Bst4CI	ACNGT	3 cut(s)	551, 653, 1299
Bst6I	CTCTTC	1 cut(s)	1136
BstAUI	TGTACA	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	1036, 1125
BstDEI	CTNAG	5 cut(s)	624, 896, 962, 1109, 1118
BstDSI	CCRYGG	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	87, 1080
BstFNI	CGCG	2 cut(s)	1256, 1306
BstKTI	GATC	6 cut(s)	111, 359, 636, 720, 787, 1062
BstMAI	GTCTC	5 cut(s)	209, 885, 1149, 1196, 1288
BstMBI	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
BstMWI	GCNNNNNNNGC	3 cut(s)	596, 787, 835
BstNI	CCWGG	1 cut(s)	1232
BstSCI	CCNGG	2 cut(s)	1221, 1230
BstSFI	CTRYAG	2 cut(s)	597, 886
BstUI	CGCG	2 cut(s)	1256, 1306
BstV1I	GCAGC	4 cut(s)	374, 802, 852, 1020
BstX2I	RGATCY	1 cut(s)	1059
BstXI	CCANNNNNNTGG	1 cut(s)	1071
BstYI	RGATCY	1 cut(s)	1059
Bsu36I	CCTNAGG	1 cut(s)	896
BsuRI	GGCC	4 cut(s)	406, 454, 590, 844
BtgI	CCRYGG	1 cut(s)	1064
BtrI	CACGTC	2 cut(s)	524, 1159
BtsCI	GGATG	2 cut(s)	87, 1080
BtsI	GCAGTG	2 cut(s)	825, 845
BtsIMutI	CAGTG	4 cut(s)	56, 727, 825, 845
BveI	ACCTGC	1 cut(s)	1267
Cac8I	GCNNGC	2 cut(s)	1036, 1125
Cfr13I	GGNCC	1 cut(s)	452
CsiI	ACCWGGT	1 cut(s)	1230
Csp6I	GTAC	3 cut(s)	10, 547, 1226
CviAII	CATG	6 cut(s)	179, 577, 608, 631, 1065, 1138
CviQI	GTAC	3 cut(s)	10, 547, 1226
DdeI	CTNAG	5 cut(s)	624, 896, 962, 1109, 1118
DpnI	GATC	6 cut(s)	110, 358, 635, 719, 786, 1061
DpnII	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
DriI	GACNNNNNGTC	1 cut(s)	1162
EaeI	YGGCCR	1 cut(s)	842
Eam1104I	CTCTTC	1 cut(s)	1136
Eam1105I	GACNNNNNGTC	1 cut(s)	1162
EarI	CTCTTC	1 cut(s)	1136
EciI	GGCGGA	2 cut(s)	474, 872
Ecl136II	GAGCTC	1 cut(s)	1113
Eco130I	CCWWGG	3 cut(s)	401, 1064, 1128
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	1115
Eco31I	GGTCTC	1 cut(s)	885
Eco53kI	GAGCTC	1 cut(s)	1113
Eco57I	CTGAAG	2 cut(s)	845, 959
Eco81I	CCTNAGG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	1113
EcoRII	CCWGG	1 cut(s)	1230
EcoT14I	CCWWGG	3 cut(s)	401, 1064, 1128
EcoT38I	GRGCYC	1 cut(s)	1115
ErhI	CCWWGG	3 cut(s)	401, 1064, 1128
Esp3I	CGTCTC	3 cut(s)	209, 1149, 1288
FaeI	CATG	6 cut(s)	182, 580, 611, 634, 1068, 1141
FaiI	YATR	7 cut(s)	180, 578, 609, 632, 674, 1066, 1139
FatI	CATG	6 cut(s)	178, 576, 607, 630, 1064, 1137
FauI	CCCGC	1 cut(s)	843
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	363, 473, 791, 866, 876, 1009
FokI	GGATG	2 cut(s)	94, 1087
FriOI	GRGCYC	1 cut(s)	1115
Fsp4HI	GCNGC	6 cut(s)	363, 473, 791, 866, 876, 1009
FspBI	CTAG	3 cut(s)	75, 1124, 1167
GluI	GCNGC	6 cut(s)	363, 473, 791, 866, 876, 1009
HaeIII	GGCC	4 cut(s)	406, 454, 590, 844
HapII	CCGG	3 cut(s)	530, 845, 1222
Hin1II	CATG	6 cut(s)	182, 580, 611, 634, 1068, 1141
HinfI	GANTC	7 cut(s)	292, 313, 335, 901, 1163, 1206, 1288
HpaII	CCGG	3 cut(s)	530, 845, 1222
Hpy166II	GTNNAC	5 cut(s)	325, 554, 709, 775, 1228
Hpy188III	TCNNGA	5 cut(s)	124, 146, 262, 510, 530
Hpy8I	GTNNAC	5 cut(s)	325, 554, 709, 775, 1228
Hpy99I	CGWCG	2 cut(s)	116, 525
HpyAV	CCTTC	4 cut(s)	62, 422, 934, 1255
HpyCH4III	ACNGT	3 cut(s)	551, 653, 1299
HpyCH4IV	ACGT	3 cut(s)	523, 663, 1158
HpyCH4V	TGCA	7 cut(s)	386, 572, 599, 617, 737, 755, 1276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	596, 787, 835
HpyF3I	CTNAG	5 cut(s)	624, 896, 962, 1109, 1118
HpySE526I	ACGT	3 cut(s)	523, 663, 1158
Hsp92II	CATG	6 cut(s)	182, 580, 611, 634, 1068, 1141
Kpn2I	TCCGGA	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
LmnI	GCTCC	3 cut(s)	107, 286, 943
Lsp1109I	GCAGC	4 cut(s)	374, 802, 852, 1020
LweI	GCATC	3 cut(s)	72, 559, 1065
MabI	ACCWGGT	1 cut(s)	1230
MaeI	CTAG	3 cut(s)	75, 1124, 1167
MaeII	ACGT	3 cut(s)	523, 663, 1158
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	6 cut(s)	110, 358, 635, 719, 786, 1061
MboI	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
MboII	GAAGA	7 cut(s)	33, 101, 277, 789, 978, 1153, 1196
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	2 cut(s)	261, 1115
MluCI	AATT	3 cut(s)	13, 740, 1264
MlyI	GAGTC	4 cut(s)	286, 344, 1172, 1215
MmeI	TCCRAC	3 cut(s)	144, 660, 972
MroI	TCCGGA	1 cut(s)	529
MroXI	GAANNNNTTC	2 cut(s)	830, 1244
MseI	TTAA	2 cut(s)	5, 500
MslI	CAYNNNNRTG	2 cut(s)	240, 1069
MspI	CCGG	3 cut(s)	530, 845, 1222
MspR9I	CCNGG	2 cut(s)	1223, 1232
MunI	CAATTG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	1232
MvnI	CGCG	2 cut(s)	1256, 1306
MwoI	GCNNNNNNNGC	3 cut(s)	596, 787, 835
NciI	CCSGG	1 cut(s)	1223
NcoI	CCATGG	1 cut(s)	1064
NdeII	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
NheI	GCTAGC	1 cut(s)	1123
NlaIII	CATG	6 cut(s)	182, 580, 611, 634, 1068, 1141
NlaIV	GGNNCC	2 cut(s)	945, 1260
PaqCI	CACCTGC	1 cut(s)	1267
PceI	AGGCCT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	642, 1303
PdmI	GAANNNNTTC	2 cut(s)	830, 1244
PfeI	GAWTC	3 cut(s)	313, 901, 1288
PkrI	GCNGC	6 cut(s)	364, 474, 792, 867, 877, 1010
PleI	GAGTC	4 cut(s)	286, 343, 1171, 1214
PpsI	GAGTC	4 cut(s)	286, 343, 1171, 1214
PshBI	ATTAAT	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	1115
Psp6I	CCWGG	1 cut(s)	1230
PspGI	CCWGG	1 cut(s)	1230
PspN4I	GGNNCC	2 cut(s)	945, 1260
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	1059
RsaI	GTAC	3 cut(s)	11, 548, 1227
RsaNI	GTAC	3 cut(s)	10, 547, 1226
RseI	CAYNNNNRTG	2 cut(s)	240, 1069
SacI	GAGCTC	1 cut(s)	1115
SaqAI	TTAA	2 cut(s)	5, 500
SatI	GCNGC	6 cut(s)	363, 473, 791, 866, 876, 1009
Sau3AI	GATC	6 cut(s)	108, 356, 633, 717, 784, 1059
Sau96I	GGNCC	1 cut(s)	452
SbfI	CCTGCAGG	1 cut(s)	601
SchI	GAGTC	4 cut(s)	286, 344, 1172, 1215
ScrFI	CCNGG	2 cut(s)	1223, 1232
SdaI	CCTGCAGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	261, 1115
SexAI	ACCWGGT	1 cut(s)	1230
SfaNI	GCATC	3 cut(s)	72, 559, 1065
SfcI	CTRYAG	2 cut(s)	597, 886
SmiMI	CAYNNNNRTG	2 cut(s)	240, 1069
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse8387I	CCTGCAGG	1 cut(s)	601
Sse9I	AATT	3 cut(s)	13, 740, 1264
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	7 cut(s)	470, 473, 485, 836, 857, 876, 1256
SspMI	CTAG	3 cut(s)	75, 1124, 1167
SstI	GAGCTC	1 cut(s)	1115
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	1221, 1230
StyI	CCWWGG	3 cut(s)	401, 1064, 1128
TaaI	ACNGT	3 cut(s)	551, 653, 1299
TaiI	ACGT	3 cut(s)	526, 666, 1161
TaqI	TCGA	7 cut(s)	135, 147, 645, 687, 729, 807, 1310
TasI	AATT	3 cut(s)	13, 740, 1264
TatI	WGTACW	1 cut(s)	9
TauI	GCSGC	2 cut(s)	475, 878
TfiI	GAWTC	3 cut(s)	313, 901, 1288
Tru1I	TTAA	2 cut(s)	5, 500
Tru9I	TTAA	2 cut(s)	5, 500
TscAI	CASTG	4 cut(s)	63, 727, 825, 845
TseI	GCWGC	4 cut(s)	362, 790, 865, 1008
TspDTI	ATGAA	4 cut(s)	596, 645, 1118, 1154
TspGWI	ACGGA	1 cut(s)	1199
TspRI	CASTG	4 cut(s)	63, 727, 825, 845
VspI	ATTAAT	1 cut(s)	500
XapI	RAATTY	2 cut(s)	740, 1264
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	2 cut(s)	830, 1244
XspI	CTAG	3 cut(s)	75, 1124, 1167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.