Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

3781366 .. 3784263

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGCCAGAAGAAGATGAAAATGCAGAGATCATCACCTTCCTCAAGAAAGAACTCGAAGACTCTCTCGAAAAGAAGGGTTCATTGGAGAAAGAAAATCATGATCTCAGACAAGAAGTTGCCCGTCTCAAAGCTCAAATAACTTCCCTCAAAGCACACAACAGTGAGAGAAAATCTGTTCTCTGGAAGAAGTTTCAGAACTCTATGGAGAACAATTATACTGACGCATCTCAACAGAAACAATCAGCTTTTGTAGATATATCAGAGCAAAGTCCAGCCAAAGAGAAAATGTGTCCAAGACCAGACAACACAGAATCTCAAGCCACAAAGGAAAGGCCAGCAAGATTACCAACCAACGCACCCCCACCACCAAGGCCTCCTCCAATTTCACCCAAGGAGGTGAAAGAGAATAAAGGGCTATCAGCACCAGCACCGCCACCTCCGCCTCCACCCTCAAAATCACTCCTCGGATCAAAAGGAGTCCGCCGTGTGCCAGAAGTAATTGAGCTGTACCGTTCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCTCTTACCAAGAACATGATCGGAGAAATCGAAAACCGTTCATCTTATCTTTCAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATCAATTTCCTGATCAGTGAGGTTGAGTCTGCAAAATTTACAAACATTGCTGATGTAGAAGCATTTGTAAACTGGCTGGACCGGCAGCTGTCTTCCTTGGTTGATGAGAGGGCAGTGCTTAAACATTTCCCGCAGTGGCCGGAACGAAAAGCGGACACACTGCGGGAAGCTGCTTGCAACTACAGAGACCTCAGAAATCTGAAATCTGAAGTCACATCATTTGAAGACAACATGAAAGAGCCAATGATCCTTGCTCTAAGAAGAATGGAAGCATTACAAGACAGGTTGGAAAGAAGTGTTAGCAGTGCAGAGAGGACAAGAGAGAGTGCCAGCAAGAAATACAGAGATTTCCAGATCCCATGGGAATGGATGCTAGACACAGGGCTGATGGGGCAGATGAAATTAAGTTCACTAAGGCTAGCCAAGGAGTACATGAAAAGGATTATCAAGGAAGTTCAGTCTAGTGACTGCTCAAGAGAAGATAATCTTTTGCTTCAAGGAGTCCGGTTCGCTTTCCGAGTACACCAGTTTGCAGGTGGTTTCAATTCGGAGACCGTACTTACATTTGAGGAACTGAAGAAGATAGGCACGAATAGTAGCAGAAATGGCACGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

48.74

Weight (kDa)

8.51

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1190
Acc36I	ACCTGC	1 cut(s)	1190
AciI	CCGC	6 cut(s)	431, 440, 481, 797, 818, 829
AclWI	GGATC	4 cut(s)	475, 524, 907, 1015
AcoI	YGGCCR	1 cut(s)	803
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	2 cut(s)	894, 1262
AfaI	GTAC	4 cut(s)	509, 1097, 1188, 1224
AgsI	TTSAA	3 cut(s)	890, 1163, 1210
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	6 cut(s)	131, 245, 505, 632, 754, 836
AluI	AGCT	6 cut(s)	131, 245, 505, 632, 754, 836
Alw26I	GTCTC	3 cut(s)	128, 846, 1211
AlwI	GGATC	4 cut(s)	475, 524, 907, 1015
AoxI	GGCC	3 cut(s)	332, 371, 803
ApeKI	GCWGC	2 cut(s)	751, 836
ApoI	RAATTY	1 cut(s)	701
AspS9I	GGNCC	1 cut(s)	745
AsuHPI	GGTGA	3 cut(s)	25, 378, 409
AsuNHI	GCTAGC	1 cut(s)	1084
AvaII	GGWCC	1 cut(s)	745
BbsI	GAAGAC	3 cut(s)	63, 750, 897
BbvI	GCAGC	2 cut(s)	763, 823
BccI	CCATC	1 cut(s)	1048
BceAI	ACGGC	1 cut(s)	468
BclI	TGATCA	1 cut(s)	678
BcoDI	GTCTC	3 cut(s)	128, 846, 1211
BfaI	CTAG	3 cut(s)	1040, 1085, 1128
BfmI	CTRYAG	2 cut(s)	558, 847
BfuAI	ACCTGC	1 cut(s)	1190
BisI	GCNGC	2 cut(s)	752, 837
BlsI	GCNGC	2 cut(s)	753, 838
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	745
BmsI	GCATC	2 cut(s)	233, 1026
BmtI	GCTAGC	1 cut(s)	1088
BpiI	GAAGAC	3 cut(s)	63, 750, 897
BpuEI	CTTGAG	3 cut(s)	26, 300, 1123
BsaI	GGTCTC	2 cut(s)	846, 1211
BsaJI	CCNNGG	6 cut(s)	368, 390, 463, 762, 1025, 1089
BsaWI	WCCGGW	1 cut(s)	1170
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bse118I	RCCGGY	1 cut(s)	747
Bse1I	ACTGG	2 cut(s)	743, 1192
Bse3DI	GCAATG	1 cut(s)	711
BseDI	CCNNGG	6 cut(s)	368, 390, 463, 762, 1025, 1089
BseGI	GGATG	1 cut(s)	1041
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	118, 871
BseNI	ACTGG	2 cut(s)	743, 1192
BseRI	GAGGAG	2 cut(s)	366, 452
BseXI	GCAGC	2 cut(s)	763, 823
BsgI	GTGCAG	1 cut(s)	993
BshFI	GGCC	3 cut(s)	334, 373, 805
BsiSI	CCGG	3 cut(s)	748, 806, 1171
BsmAI	GTCTC	3 cut(s)	128, 846, 1211
BsmBI	CGTCTC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	334, 373, 805
Bso31I	GGTCTC	2 cut(s)	846, 1211
Bsp143I	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
Bsp19I	CCATGG	1 cut(s)	1025
BspACI	CCGC	6 cut(s)	431, 440, 481, 797, 818, 829
BspANI	GGCC	3 cut(s)	334, 373, 805
BspCNI	CTCAG	2 cut(s)	117, 870
BspHI	TCATGA	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	1190
BspOI	GCTAGC	1 cut(s)	1088
BspPI	GGATC	4 cut(s)	475, 524, 907, 1015
BspTNI	GGTCTC	2 cut(s)	846, 1211
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	743, 1192
BssAI	RCCGGY	1 cut(s)	747
BssECI	CCNNGG	6 cut(s)	368, 390, 463, 762, 1025, 1089
BssMI	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
BssT1I	CCWWGG	5 cut(s)	368, 390, 762, 1025, 1089
Bst4CI	ACNGT	4 cut(s)	161, 512, 614, 1222
BstC8I	GCNNGC	5 cut(s)	336, 841, 997, 1086, 1277
BstDEI	CTNAG	4 cut(s)	104, 857, 923, 1079
BstDSI	CCRYGG	1 cut(s)	1025
BstF5I	GGATG	1 cut(s)	1041
BstKTI	GATC	8 cut(s)	30, 103, 470, 532, 597, 681, 915, 1023
BstMAI	GTCTC	3 cut(s)	128, 846, 1211
BstMBI	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
BstMWI	GCNNNNNNNGC	5 cut(s)	439, 557, 748, 1057, 1272
BstSFI	CTRYAG	2 cut(s)	558, 847
BstV1I	GCAGC	2 cut(s)	763, 823
BstV2I	GAAGAC	3 cut(s)	63, 750, 897
BstX2I	RGATCY	2 cut(s)	529, 1020
BstXI	CCANNNNNNTGG	1 cut(s)	1032
BstYI	RGATCY	2 cut(s)	529, 1020
BsuRI	GGCC	3 cut(s)	334, 373, 805
BtgI	CCRYGG	1 cut(s)	1025
BtsCI	GGATG	1 cut(s)	1041
BtsI	GCAGTG	4 cut(s)	786, 806, 824, 976
BtsIMutI	CAGTG	6 cut(s)	166, 688, 786, 806, 824, 976
BveI	ACCTGC	1 cut(s)	1190
Cac8I	GCNNGC	5 cut(s)	336, 841, 997, 1086, 1277
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	747
Cfr13I	GGNCC	1 cut(s)	745
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	4 cut(s)	508, 1096, 1187, 1223
CviAII	CATG	7 cut(s)	98, 538, 569, 592, 898, 1026, 1099
CviQI	GTAC	4 cut(s)	508, 1096, 1187, 1223
DdeI	CTNAG	4 cut(s)	104, 857, 923, 1079
DpnI	GATC	8 cut(s)	29, 102, 469, 531, 596, 680, 914, 1022
DpnII	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
EaeI	YGGCCR	1 cut(s)	803
EciI	GGCGGA	2 cut(s)	429, 470
Eco130I	CCWWGG	5 cut(s)	368, 390, 762, 1025, 1089
Eco147I	AGGCCT	1 cut(s)	373
Eco31I	GGTCTC	2 cut(s)	846, 1211
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	894, 1262
EcoT14I	CCWWGG	5 cut(s)	368, 390, 762, 1025, 1089
ErhI	CCWWGG	5 cut(s)	368, 390, 762, 1025, 1089
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	7 cut(s)	101, 541, 572, 595, 901, 1029, 1102
FalI	AAGNNNNNCTT	2 cut(s)	1137, 1169
FatI	CATG	7 cut(s)	97, 537, 568, 591, 897, 1025, 1098
FauI	CCCGC	2 cut(s)	804, 822
FbaI	TGATCA	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	752, 837
FokI	GGATG	1 cut(s)	1048
Fsp4HI	GCNGC	2 cut(s)	752, 837
FspBI	CTAG	3 cut(s)	1040, 1085, 1128
GluI	GCNGC	2 cut(s)	752, 837
HaeIII	GGCC	3 cut(s)	334, 373, 805
HapII	CCGG	3 cut(s)	748, 806, 1171
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	7 cut(s)	101, 541, 572, 595, 901, 1029, 1102
HinfI	GANTC	5 cut(s)	59, 311, 477, 692, 1167
HpaII	CCGG	3 cut(s)	748, 806, 1171
HphI	GGTGA	3 cut(s)	25, 378, 409
Hpy166II	GTNNAC	4 cut(s)	515, 736, 1076, 1189
Hpy188III	TCNNGA	7 cut(s)	43, 65, 98, 181, 676, 1018, 1140
Hpy8I	GTNNAC	4 cut(s)	515, 736, 1076, 1189
HpyAV	CCTTC	2 cut(s)	46, 67
HpyCH4III	ACNGT	4 cut(s)	161, 512, 614, 1222
HpyCH4V	TGCA	6 cut(s)	23, 560, 698, 843, 974, 1199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	439, 557, 748, 1057, 1272
HpyF3I	CTNAG	4 cut(s)	104, 857, 923, 1079
Hsp92II	CATG	7 cut(s)	101, 541, 572, 595, 901, 1029, 1102
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
Lsp1109I	GCAGC	2 cut(s)	763, 823
LweI	GCATC	2 cut(s)	233, 1026
MaeI	CTAG	3 cut(s)	1040, 1085, 1128
MaeIII	GTNAC	2 cut(s)	877, 1130
MalI	GATC	8 cut(s)	29, 102, 469, 531, 596, 680, 914, 1022
MboI	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
MflI	RGATCY	2 cut(s)	529, 1020
MluCI	AATT	7 cut(s)	211, 381, 498, 670, 701, 1067, 1210
MlyI	GAGTC	4 cut(s)	53, 486, 701, 1176
MmeI	TCCRAC	1 cut(s)	933
MseI	TTAA	2 cut(s)	786, 1070
MslI	CAYNNNNRTG	2 cut(s)	159, 1030
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	3 cut(s)	748, 806, 1171
MwoI	GCNNNNNNNGC	5 cut(s)	439, 557, 748, 1057, 1272
NcoI	CCATGG	1 cut(s)	1025
NdeII	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
NheI	GCTAGC	1 cut(s)	1084
NlaIII	CATG	7 cut(s)	101, 541, 572, 595, 901, 1029, 1102
NmuCI	GTSAC	2 cut(s)	877, 1130
OliI	CACNNNNGTG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	1190
PceI	AGGCCT	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	753, 838
PleI	GAGTC	4 cut(s)	53, 485, 700, 1175
PpsI	GAGTC	4 cut(s)	53, 485, 700, 1175
PspPI	GGNCC	1 cut(s)	745
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	2 cut(s)	529, 1020
PvuII	CAGCTG	1 cut(s)	754
RsaI	GTAC	4 cut(s)	509, 1097, 1188, 1224
RsaNI	GTAC	4 cut(s)	508, 1096, 1187, 1223
RseI	CAYNNNNRTG	2 cut(s)	159, 1030
SaqAI	TTAA	2 cut(s)	786, 1070
SatI	GCNGC	2 cut(s)	752, 837
Sau3AI	GATC	8 cut(s)	27, 100, 467, 529, 594, 678, 912, 1020
Sau96I	GGNCC	1 cut(s)	745
SbfI	CCTGCAGG	1 cut(s)	562
SchI	GAGTC	4 cut(s)	53, 486, 701, 1176
SdaI	CCTGCAGG	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	233, 1026
SfcI	CTRYAG	2 cut(s)	558, 847
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	2 cut(s)	159, 1030
SmlI	CTYRAG	3 cut(s)	41, 315, 1138
SmoI	CTYRAG	3 cut(s)	41, 315, 1138
Sse8387I	CCTGCAGG	1 cut(s)	562
Sse9I	AATT	7 cut(s)	211, 381, 498, 670, 701, 1067, 1210
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	6 cut(s)	431, 440, 481, 797, 818, 829
SspMI	CTAG	3 cut(s)	1040, 1085, 1128
StuI	AGGCCT	1 cut(s)	373
StyI	CCWWGG	5 cut(s)	368, 390, 762, 1025, 1089
TaaI	ACNGT	4 cut(s)	161, 512, 614, 1222
TaqI	TCGA	4 cut(s)	54, 66, 606, 648
TasI	AATT	7 cut(s)	211, 381, 498, 670, 701, 1067, 1210
TatI	WGTACW	2 cut(s)	1095, 1186
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	786, 1070
Tru9I	TTAA	2 cut(s)	786, 1070
TscAI	CASTG	6 cut(s)	166, 688, 786, 806, 831, 976
TseFI	GTSAC	2 cut(s)	877, 1130
TseI	GCWGC	2 cut(s)	751, 836
Tsp45I	GTSAC	2 cut(s)	877, 1130
TspDTI	ATGAA	8 cut(s)	30, 69, 557, 606, 655, 914, 1079, 1115
TspRI	CASTG	6 cut(s)	166, 688, 786, 806, 831, 976
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1199
XspI	CTAG	3 cut(s)	1040, 1085, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.