Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

76126761 .. 76129016

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34562

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCCACAGGAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAAGAACTCGAAGCTTCTCTCGAAAAGAATGCTTCACTGGAGAAAGAAAACCACGAGCTGAGACGAGAAGTTTCTCGCCTCAGAGATCAGATAACTTCCCTTAAAGCACACAACCATGACAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCTGCAAAAGAGAAAATGAGTCCGAAGTTAGACTTCACAGAGGAAAAGCTGGCAACGACATTGACAAATGCACCACCGCCCAAACCACCTCCAACTCCTCCTGCTTCATTCAAGGAGGTAAAGGGAAATAAAGGGCCGTCAGCATCAGCACCTCCACCTCCACCACCGCCCTCAAAATCACTAGTCGGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTCTACCGATCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCGGTGAGGTGGAGTCAGCAACCTTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTTGATGAAAGAGCAGTCTTGAAGCATTTTCCGCAGTGGCCAGAACGAAAAGCCGACACTCTGCGAGAAGCTGCTTGCAACTACAGAGATCTCAGAAACCTCAAATCCGAAGTCTCATCATTTGAAGACAGCATGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATAGAAGCATTACAAGATAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACCAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGTCTGATCGGACAGTTGAAAGTAAGTTCTCTAAGGCTGGCCAAAGAGTTCATGAAAAGGATTATCAAAGAAGTGCAGTCTAGTGAATGCTCAAGAGTAGAAAACCTCTTGCTCCAAGGAGTCCGATTTGCTTTCCGAGTACACCAGTTTGCAGGCGGATTTGATTCAGAGACTATACTCTCCTTCGAGGAGCTAAAGAAGATAGGCACGGATATTAAGAGACAAACCAACAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

47.01

Weight (kDa)

8.92

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	305, 395, 746, 1152
AclWI	GGATC	3 cut(s)	473, 702, 964
AcoI	YGGCCR	2 cut(s)	752, 1035
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	1 cut(s)	1137
AgsI	TTSAA	5 cut(s)	340, 420, 736, 839, 1015
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	9 cut(s)	62, 106, 230, 277, 454, 581, 703, 785, 1189
AluI	AGCT	9 cut(s)	62, 106, 230, 277, 454, 581, 703, 785, 1189
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	4 cut(s)	103, 832, 1160, 1210
AlwI	GGATC	3 cut(s)	473, 702, 964
AoxI	GGCC	3 cut(s)	362, 752, 1035
ApeKI	GCWGC	4 cut(s)	230, 700, 785, 918
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	28, 523, 644
BalI	TGGCCA	2 cut(s)	754, 1037
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	217, 712, 772, 930
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	2 cut(s)	349, 417
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	103, 832, 1160, 1210
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	2 cut(s)	410, 1077
BfmI	CTRYAG	2 cut(s)	507, 796
BfuI	GTATCC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	4 cut(s)	231, 701, 786, 919
BlsI	GCNGC	4 cut(s)	232, 702, 787, 920
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	855
BmsI	GCATC	1 cut(s)	380
BoxI	GACNNNNGTC	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	1072
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	711, 974, 1111
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse1I	ACTGG	2 cut(s)	90, 1141
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	711, 974, 1111
BseGI	GGATG	1 cut(s)	990
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	5 cut(s)	36, 58, 98, 142, 820
BseNI	ACTGG	2 cut(s)	90, 1141
BseRI	GAGGAG	2 cut(s)	315, 1199
BseXI	GCAGC	4 cut(s)	217, 712, 772, 930
BsgI	GTGCAG	1 cut(s)	1091
BshFI	GGCC	3 cut(s)	364, 754, 1037
BsiHKAI	GWGCWC	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	950
BsmAI	GTCTC	4 cut(s)	103, 832, 1160, 1210
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	2 cut(s)	82, 1088
BsnI	GGCC	3 cut(s)	364, 754, 1037
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	4 cut(s)	305, 395, 746, 1152
BspANI	GGCC	3 cut(s)	364, 754, 1037
BspCNI	CTCAG	5 cut(s)	35, 57, 99, 141, 819
BspHI	TCATGA	2 cut(s)	30, 1047
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	3 cut(s)	473, 702, 964
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	90, 1141
BssECI	CCNNGG	3 cut(s)	711, 974, 1111
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	3 cut(s)	711, 974, 1111
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	178, 1011, 1233
BstC8I	GCNNGC	4 cut(s)	279, 790, 1035, 1150
BstDEI	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 914, 1028
BstDSI	CCRYGG	1 cut(s)	974
BstF5I	GGATG	1 cut(s)	990
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	4 cut(s)	103, 832, 1160, 1210
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
BstPAI	GACNNNNGTC	1 cut(s)	996
BstSFI	CTRYAG	2 cut(s)	507, 796
BstV1I	GCAGC	4 cut(s)	217, 712, 772, 930
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	3 cut(s)	478, 802, 969
BstXI	CCANNNNNNTGG	1 cut(s)	981
BstYI	RGATCY	3 cut(s)	478, 802, 969
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	3 cut(s)	364, 754, 1037
BtgI	CCRYGG	1 cut(s)	974
BtsCI	GGATG	1 cut(s)	990
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	83, 755
Cac8I	GCNNGC	4 cut(s)	279, 790, 1035, 1150
CciI	TCATGA	2 cut(s)	30, 1047
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	1136
CviAII	CATG	8 cut(s)	31, 164, 487, 518, 541, 847, 975, 1048
CviQI	GTAC	1 cut(s)	1136
DdeI	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 914, 1028
EaeI	YGGCCR	2 cut(s)	752, 1035
EciI	GGCGGA	1 cut(s)	1167
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	711, 974, 1111
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoT14I	CCWWGG	3 cut(s)	711, 974, 1111
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	3 cut(s)	711, 974, 1111
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	8 cut(s)	34, 167, 490, 521, 544, 850, 978, 1051
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	8 cut(s)	30, 163, 486, 517, 540, 846, 974, 1047
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	231, 701, 786, 919
FokI	GGATG	1 cut(s)	997
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	231, 701, 786, 919
FspBI	CTAG	2 cut(s)	410, 1077
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	231, 701, 786, 919
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	364, 754, 1037
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	8 cut(s)	34, 167, 490, 521, 544, 850, 978, 1051
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	4 cut(s)	247, 641, 1116, 1160
HphI	GGTGA	3 cut(s)	28, 523, 644
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188III	TCNNGA	8 cut(s)	31, 68, 184, 196, 625, 733, 1048, 1089
Hpy8I	GTNNAC	1 cut(s)	1138
HpyAV	CCTTC	3 cut(s)	49, 844, 1189
HpyCH4III	ACNGT	3 cut(s)	178, 1011, 1233
HpyCH4V	TGCA	7 cut(s)	233, 299, 509, 527, 792, 1072, 1148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
HpyF3I	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 914, 1028
Hsp92II	CATG	8 cut(s)	34, 167, 490, 521, 544, 850, 978, 1051
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	853, 1113, 1186
Lsp1109I	GCAGC	4 cut(s)	217, 712, 772, 930
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	2 cut(s)	410, 1077
MboII	GAAGA	5 cut(s)	23, 199, 851, 888, 1207
MflI	RGATCY	3 cut(s)	478, 802, 969
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	2 cut(s)	754, 1037
MluCI	AATT	3 cut(s)	447, 619, 685
MluNI	TGGCCA	2 cut(s)	754, 1037
MlyI	GAGTC	3 cut(s)	256, 650, 1125
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	2 cut(s)	754, 1037
MroXI	GAANNNNTTC	1 cut(s)	191
MscI	TGGCCA	2 cut(s)	754, 1037
MseI	TTAA	3 cut(s)	150, 654, 1212
MslI	CAYNNNNRTG	2 cut(s)	162, 979
Msp20I	TGGCCA	2 cut(s)	754, 1037
MspA1I	CMGCKG	2 cut(s)	230, 703
Mva1269I	GAATGC	2 cut(s)	82, 1088
MwoI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
NcoI	CCATGG	1 cut(s)	974
NlaIII	CATG	8 cut(s)	34, 167, 490, 521, 544, 850, 978, 1051
NlaIV	GGNNCC	1 cut(s)	855
PagI	TCATGA	2 cut(s)	30, 1047
PctI	GAATGC	2 cut(s)	82, 1088
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	1160
PkrI	GCNGC	4 cut(s)	232, 702, 787, 920
PleI	GAGTC	3 cut(s)	255, 649, 1124
PpsI	GAGTC	3 cut(s)	255, 649, 1124
PshAI	GACNNNNGTC	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	3 cut(s)	478, 802, 969
PvuII	CAGCTG	2 cut(s)	230, 703
RsaI	GTAC	1 cut(s)	1137
RsaNI	GTAC	1 cut(s)	1136
RseI	CAYNNNNRTG	2 cut(s)	162, 979
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	3 cut(s)	150, 654, 1212
SatI	GCNGC	4 cut(s)	231, 701, 786, 919
Sau96I	GGNCC	1 cut(s)	362
SbfI	CCTGCAGG	1 cut(s)	511
SchI	GAGTC	3 cut(s)	256, 650, 1125
SdaI	CCTGCAGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	380
SfcI	CTRYAG	2 cut(s)	507, 796
SmiMI	CAYNNNNRTG	2 cut(s)	162, 979
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
SpeI	ACTAGT	1 cut(s)	409
Sse8387I	CCTGCAGG	1 cut(s)	511
Sse9I	AATT	3 cut(s)	447, 619, 685
SsiI	CCGC	4 cut(s)	305, 395, 746, 1152
SspMI	CTAG	2 cut(s)	410, 1077
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	3 cut(s)	711, 974, 1111
TaaI	ACNGT	3 cut(s)	178, 1011, 1233
TaqI	TCGA	6 cut(s)	57, 69, 203, 555, 597, 1182
TasI	AATT	3 cut(s)	447, 619, 685
TatI	WGTACW	1 cut(s)	1135
TfiI	GAWTC	1 cut(s)	1160
Tru1I	TTAA	3 cut(s)	150, 654, 1212
Tru9I	TTAA	3 cut(s)	150, 654, 1212
TscAI	CASTG	2 cut(s)	90, 755
TseI	GCWGC	4 cut(s)	230, 700, 785, 918
TspDTI	ATGAA	9 cut(s)	30, 324, 506, 555, 604, 735, 863, 1036, 1064
TspGWI	ACGGA	1 cut(s)	1220
TspRI	CASTG	2 cut(s)	90, 755
XapI	RAATTY	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	410, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.