Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

75105714 .. 75108910

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAAAGAGGAACAAGATCCAAAAGAACCTCTATGTCACACTCCTATCTCCTTGTGTCATCGTCCTTACACTGAAGGCAGGATGCCACAAGAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAAGAACTCGAAGCTTCTCTCGAAAAGAATGCTTCACTGGAGAAAGAAAACCACGAGCTGAGACGAGAAGTTTCTCGCCTCAGAGATCAGATAACTTCCCTTAAAGCACACAACCATGAGAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCTGCAAAAGAGAAAATGAGTCCGAAATTAGACTTCACAGAGGAAAAGCCGGCAACGACATTGACAAATGCGCCACCGCCCAAACCACCTCCAACTCCTCCTGCTTCATTCAAGGAGGTAAAGGGAAATAAAGGGCCGTCAGCACCAGCACCTCCACCTCCACCACCGCCCTCAAAATCACTAGTCGGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTCTACCGATCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCGGTGAGGTGGAGTCAGCAACCTTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTTGATGAAAGAGCAGTCTTGAAGCATTTTCCGCAGTGGCCAGAACGAAAAGCCGACACTCTGCGAGAAGCTGCTTGCAACTACAGAGACCTCAGAAACCTCAAATCCGAAGTCTCATCATTCGAAGACAGCATGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATAGAAGCATTACAAGATAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACCAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGTCTGATCGGACAGTTGAAAGTAAGTTCTCTAAGGCTGGCCAAAGAGTTCATGAAAAGGATTATCAAAGAAGTGCAGTCTAGTGAATGCTCAAGAGTAGAAAACCTCTTGCTCCAGGGAGTCCGATTTGCTTTCCGAGTACACCAGTTTGCAGGCGGATTTGATTCAGAGACTATACTCTCCTTCGAGGAGCTAAAGAAGATAGGGACGGATAGTAAGAAACAAACCAACAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

438

Amino Acids

50.14

Weight (kDa)

8.64

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	386, 476, 827, 1233
AclWI	GGATC	4 cut(s)	11, 554, 783, 1045
AcoI	YGGCCR	2 cut(s)	833, 1116
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	1218
AgsI	TTSAA	4 cut(s)	421, 501, 817, 1096
AhlI	ACTAGT	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	1191
AluBI	AGCT	8 cut(s)	143, 187, 311, 535, 662, 784, 866, 1270
AluI	AGCT	8 cut(s)	143, 187, 311, 535, 662, 784, 866, 1270
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	4 cut(s)	184, 876, 913, 1241
AlwI	GGATC	4 cut(s)	11, 554, 783, 1045
AoxI	GGCC	3 cut(s)	443, 833, 1116
ApeKI	GCWGC	4 cut(s)	311, 781, 866, 999
ApoI	RAATTY	1 cut(s)	700
ArsI	GACNNNNNNTTYG	2 cut(s)	891, 923
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	382, 513
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	3 cut(s)	109, 604, 725
AsuII	TTCGAA	1 cut(s)	918
BalI	TGGCCA	2 cut(s)	835, 1118
BanII	GRGCYC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	298, 793, 853, 1011
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	430, 498
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	1193
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	4 cut(s)	184, 876, 913, 1241
BcuI	ACTAGT	1 cut(s)	490
BfaI	CTAG	2 cut(s)	491, 1158
BfmI	CTRYAG	2 cut(s)	588, 877
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	4 cut(s)	312, 782, 867, 1000
BlsI	GCNGC	4 cut(s)	313, 783, 868, 1001
Bme1390I	CCNGG	1 cut(s)	1193
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	936
BmrFI	CCNGG	1 cut(s)	1193
BmsI	GCATC	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	1077
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	2 cut(s)	188, 1175
Bpu14I	TTCGAA	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	1153
BsaBI	GATNNNNATC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	792, 1055, 1192
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	171, 1222
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	1193
BseDI	CCNNGG	3 cut(s)	792, 1055, 1192
BseGI	GGATG	2 cut(s)	87, 1071
BseJI	GATNNNNATC	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	5 cut(s)	117, 139, 179, 223, 901
BseNI	ACTGG	2 cut(s)	171, 1222
BseRI	GAGGAG	2 cut(s)	396, 1280
BseXI	GCAGC	4 cut(s)	298, 793, 853, 1011
BsgI	GTGCAG	1 cut(s)	1172
BshFI	GGCC	3 cut(s)	445, 835, 1118
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	2 cut(s)	1031, 1297
BsmAI	GTCTC	4 cut(s)	184, 876, 913, 1241
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	1031, 1297
BsmI	GAATGC	2 cut(s)	163, 1169
BsnI	GGCC	3 cut(s)	445, 835, 1118
Bso31I	GGTCTC	1 cut(s)	876
Bsp119I	TTCGAA	1 cut(s)	918
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp19I	CCATGG	1 cut(s)	1055
BspACI	CCGC	4 cut(s)	386, 476, 827, 1233
BspANI	GGCC	3 cut(s)	445, 835, 1118
BspCNI	CTCAG	5 cut(s)	116, 138, 180, 222, 900
BspHI	TCATGA	2 cut(s)	111, 1128
BspLI	GGNNCC	1 cut(s)	936
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	4 cut(s)	11, 554, 783, 1045
BspT104I	TTCGAA	1 cut(s)	918
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	171, 1222
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	3 cut(s)	792, 1055, 1192
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	792, 1055
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	1193
Bst4CI	ACNGT	3 cut(s)	259, 1092, 1314
BstBI	TTCGAA	1 cut(s)	918
BstC8I	GCNNGC	4 cut(s)	360, 871, 1116, 1231
BstDEI	CTNAG	8 cut(s)	103, 125, 188, 209, 887, 953, 995, 1109
BstDSI	CCRYGG	1 cut(s)	1055
BstF5I	GGATG	2 cut(s)	87, 1071
BstHHI	GCGC	2 cut(s)	382, 513
BstMAI	GTCTC	4 cut(s)	184, 876, 913, 1241
BstMWI	GCNNNNNNNGC	4 cut(s)	517, 587, 778, 826
BstNI	CCWGG	1 cut(s)	1193
BstPAI	GACNNNNGTC	1 cut(s)	1077
BstSCI	CCNGG	1 cut(s)	1191
BstSFI	CTRYAG	2 cut(s)	588, 877
BstV1I	GCAGC	4 cut(s)	298, 793, 853, 1011
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	3 cut(s)	16, 559, 1050
BstXI	CCANNNNNNTGG	1 cut(s)	1062
BstYI	RGATCY	3 cut(s)	16, 559, 1050
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	445, 835, 1118
BtgI	CCRYGG	1 cut(s)	1055
BtsCI	GGATG	2 cut(s)	87, 1071
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	69, 164, 836
Cac8I	GCNNGC	4 cut(s)	360, 871, 1116, 1231
CciI	TCATGA	2 cut(s)	111, 1128
CfoI	GCGC	2 cut(s)	382, 513
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	1217
CviAII	CATG	8 cut(s)	112, 245, 568, 599, 622, 928, 1056, 1129
CviQI	GTAC	1 cut(s)	1217
DdeI	CTNAG	8 cut(s)	103, 125, 188, 209, 887, 953, 995, 1109
EaeI	YGGCCR	2 cut(s)	833, 1116
EciI	GGCGGA	1 cut(s)	1248
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	792, 1055
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	876
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	1191
EcoT14I	CCWWGG	2 cut(s)	792, 1055
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	792, 1055
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	8 cut(s)	115, 248, 571, 602, 625, 931, 1059, 1132
FaqI	GGGAC	2 cut(s)	1031, 1297
FatI	CATG	8 cut(s)	111, 244, 567, 598, 621, 927, 1055, 1128
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	312, 782, 867, 1000
FokI	GGATG	2 cut(s)	94, 1078
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	4 cut(s)	312, 782, 867, 1000
FspBI	CTAG	2 cut(s)	491, 1158
GlaI	GCGC	2 cut(s)	381, 512
GluI	GCNGC	4 cut(s)	312, 782, 867, 1000
GsuI	CTGGAG	2 cut(s)	188, 1175
HaeIII	GGCC	3 cut(s)	445, 835, 1118
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	2 cut(s)	382, 513
Hin1II	CATG	8 cut(s)	115, 248, 571, 602, 625, 931, 1059, 1132
Hin6I	GCGC	2 cut(s)	380, 511
HinP1I	GCGC	2 cut(s)	380, 511
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	4 cut(s)	328, 722, 1197, 1241
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	109, 604, 725
Hpy166II	GTNNAC	1 cut(s)	1219
Hpy188III	TCNNGA	8 cut(s)	112, 149, 265, 277, 706, 814, 1129, 1170
Hpy8I	GTNNAC	1 cut(s)	1219
HpyAV	CCTTC	4 cut(s)	68, 130, 925, 1270
HpyCH4III	ACNGT	3 cut(s)	259, 1092, 1314
HpyCH4V	TGCA	6 cut(s)	314, 590, 608, 873, 1153, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	517, 587, 778, 826
HpyF3I	CTNAG	8 cut(s)	103, 125, 188, 209, 887, 953, 995, 1109
Hsp92II	CATG	8 cut(s)	115, 248, 571, 602, 625, 931, 1059, 1132
HspAI	GCGC	2 cut(s)	380, 511
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	114
LmnI	GCTCC	3 cut(s)	934, 1194, 1267
Lsp1109I	GCAGC	4 cut(s)	298, 793, 853, 1011
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	491, 1158
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	5 cut(s)	104, 280, 932, 969, 1288
MflI	RGATCY	3 cut(s)	16, 559, 1050
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	2 cut(s)	835, 1118
MluCI	AATT	4 cut(s)	335, 528, 700, 766
MluNI	TGGCCA	2 cut(s)	835, 1118
MlyI	GAGTC	3 cut(s)	337, 731, 1206
MmeI	TCCRAC	1 cut(s)	425
Mox20I	TGGCCA	2 cut(s)	835, 1118
MroNI	GCCGGC	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	2 cut(s)	835, 1118
MseI	TTAA	2 cut(s)	231, 735
MslI	CAYNNNNRTG	2 cut(s)	243, 1060
Msp20I	TGGCCA	2 cut(s)	835, 1118
MspA1I	CMGCKG	2 cut(s)	311, 784
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	1193
Mva1269I	GAATGC	2 cut(s)	163, 1169
MvaI	CCWGG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	4 cut(s)	517, 587, 778, 826
NaeI	GCCGGC	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	1055
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	8 cut(s)	115, 248, 571, 602, 625, 931, 1059, 1132
NlaIV	GGNNCC	1 cut(s)	936
NmuCI	GTSAC	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	918
PagI	TCATGA	2 cut(s)	111, 1128
PctI	GAATGC	2 cut(s)	163, 1169
PdiI	GCCGGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	1241
PkrI	GCNGC	4 cut(s)	313, 783, 868, 1001
PleI	GAGTC	3 cut(s)	336, 730, 1205
PpsI	GAGTC	3 cut(s)	336, 730, 1205
PshAI	GACNNNNGTC	1 cut(s)	1077
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	1191
PspGI	CCWGG	1 cut(s)	1191
PspN4I	GGNNCC	1 cut(s)	936
PspPI	GGNCC	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	3 cut(s)	16, 559, 1050
PvuII	CAGCTG	2 cut(s)	311, 784
RsaI	GTAC	1 cut(s)	1218
RsaNI	GTAC	1 cut(s)	1217
RseI	CAYNNNNRTG	2 cut(s)	243, 1060
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	231, 735
SatI	GCNGC	4 cut(s)	312, 782, 867, 1000
Sau96I	GGNCC	1 cut(s)	443
SbfI	CCTGCAGG	1 cut(s)	592
SchI	GAGTC	3 cut(s)	337, 731, 1206
ScrFI	CCNGG	1 cut(s)	1193
SdaI	CCTGCAGG	1 cut(s)	592
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	2 cut(s)	588, 877
SfuI	TTCGAA	1 cut(s)	918
SmiMI	CAYNNNNRTG	2 cut(s)	243, 1060
SmlI	CTYRAG	1 cut(s)	1168
SmoI	CTYRAG	1 cut(s)	1168
SpeI	ACTAGT	1 cut(s)	490
Sse8387I	CCTGCAGG	1 cut(s)	592
Sse9I	AATT	4 cut(s)	335, 528, 700, 766
SsiI	CCGC	4 cut(s)	386, 476, 827, 1233
SspMI	CTAG	2 cut(s)	491, 1158
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	1191
StyI	CCWWGG	2 cut(s)	792, 1055
TaaI	ACNGT	3 cut(s)	259, 1092, 1314
TaqI	TCGA	7 cut(s)	138, 150, 284, 636, 678, 918, 1263
TasI	AATT	4 cut(s)	335, 528, 700, 766
TatI	WGTACW	1 cut(s)	1216
TfiI	GAWTC	1 cut(s)	1241
Tru1I	TTAA	2 cut(s)	231, 735
Tru9I	TTAA	2 cut(s)	231, 735
TscAI	CASTG	3 cut(s)	76, 171, 836
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	311, 781, 866, 999
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	1301
TspRI	CASTG	3 cut(s)	76, 171, 836
XapI	RAATTY	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	491, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.