Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007961.1

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

45094 .. 47253

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007961.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atgaaagaggaacaagatccaaaagaacctctatgtcacactcctatctccttgtgtcatcgtccttcttacactgaaggcaggatgccacaagaagatgaaaactcagagatcatgatcaccttcctcagaaaagaactcgaagcttctctcgaaaagaatgcttcactggagaaagaaaaccacgagctgagacgagaagtttctcgcttcagagatcagataacttcccttaaagcacacaaccatgagaggaaaactgttctctggaagaagttccagaactcgatggatacaccagagcaaagtccagctgcaaaagagaaaatgagtccgaaattagacttcacagaggaaaagccggcaacgacattgacaaatgcaccaccgcccaaaccacctccaactcctcctgcttcattcaaggaggtaaagggaaataaagggccgtcagcaccagcacctccacctccaccaccgccctcaaaatcactagtcggttcaaaaggagtgcgccgtgtgccagaagtaattgagctctaccgatcacttacaaggaaagatccacacatggagaacaaagccaaccctgcaggagttcatgtttttgcactcaccaagaacatgattggagaaatcgaaaatcgttcatcttatgttttagccataaagtcagaggtcgaaacacaagcagagttcataaatttcttgatcggtgaggtggagtcagcaacctttaagaacattgctgatgtagaagcatttgtgaattggctggatcggcagctgtcctccttggttgatgaaagagcagtcttgaagcattttccgcagtggccagaacgaaaagccgacactctgcgagaagctgcttgcaactacagagacctcagaaacctcaaatccgaagtctcatcattcgaagacagcatgaaggagccattgatcttggctctaagaagaatagaagcattacaagatagattggagagaagtcttagcagcacagagaggacaagggacattaccagcaagaaatacagggattttcagatcccatgggaatggatgttagacacaggtctgatcggacagttgaaagtaagttctctaaggctggccaaagagttcatgaaaaggattatcaaagaagtgcagtctagtgaatgctcaagagtagaaaacctcttgctccaaggagtccgatttgctttccgagtacaccagtttgcaggcggatttgattcagagactatactctccttcgaggagctaaagaagatagggacggatattaagagacaaaccgataaacagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

439

Amino Acids

50.32

Weight (kDa)

8.45

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	389, 479, 830, 1236
AclWI	GGATC	4 cut(s)	11, 557, 786, 1048
AcoI	YGGCCR	2 cut(s)	836, 1119
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	96, 196
AfaI	GTAC	1 cut(s)	1221
AgsI	TTSAA	4 cut(s)	424, 504, 820, 1099
AhlI	ACTAGT	1 cut(s)	493
AluBI	AGCT	7 cut(s)	146, 190, 314, 538, 787, 869, 1273
AluI	AGCT	7 cut(s)	146, 190, 314, 538, 787, 869, 1273
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	5 cut(s)	187, 879, 916, 1244, 1294
AlwI	GGATC	4 cut(s)	11, 557, 786, 1048
AoxI	GGCC	3 cut(s)	446, 836, 1119
ApeKI	GCWGC	4 cut(s)	314, 784, 869, 1002
ApoI	RAATTY	1 cut(s)	703
ArsI	GACNNNNNNTTYG	2 cut(s)	894, 926
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	112, 607, 728
AsuII	TTCGAA	1 cut(s)	921
BalI	TGGCCA	2 cut(s)	838, 1121
BanII	GRGCYC	1 cut(s)	540
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	4 cut(s)	301, 796, 856, 1014
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	2 cut(s)	433, 501
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	5 cut(s)	187, 879, 916, 1244, 1294
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	2 cut(s)	494, 1161
BfmI	CTRYAG	2 cut(s)	591, 880
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	315, 785, 870, 1003
BlsI	GCNGC	4 cut(s)	316, 786, 871, 1004
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	939
BmsI	GCATC	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	1156
BsaBI	GATNNNNATC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	879
BsaJI	CCNNGG	3 cut(s)	795, 1058, 1195
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	174, 1225
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	795, 1058, 1195
BseGI	GGATG	2 cut(s)	90, 1074
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	4 cut(s)	120, 142, 182, 904
BseNI	ACTGG	2 cut(s)	174, 1225
BseRI	GAGGAG	2 cut(s)	399, 1283
BseXI	GCAGC	4 cut(s)	301, 796, 856, 1014
BsgI	GTGCAG	1 cut(s)	1175
BshFI	GGCC	3 cut(s)	448, 838, 1121
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	2 cut(s)	1034, 1300
BsmAI	GTCTC	5 cut(s)	187, 879, 916, 1244, 1294
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	1034, 1300
BsmI	GAATGC	2 cut(s)	166, 1172
BsnI	GGCC	3 cut(s)	448, 838, 1121
Bso31I	GGTCTC	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	921
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	1058
BspACI	CCGC	4 cut(s)	389, 479, 830, 1236
BspANI	GGCC	3 cut(s)	448, 838, 1121
BspCNI	CTCAG	4 cut(s)	119, 141, 183, 903
BspHI	TCATGA	2 cut(s)	114, 1131
BspLI	GGNNCC	1 cut(s)	939
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	4 cut(s)	11, 557, 786, 1048
BspT104I	TTCGAA	1 cut(s)	921
BspTNI	GGTCTC	1 cut(s)	879
BsrDI	GCAATG	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	174, 1225
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	3 cut(s)	795, 1058, 1195
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	3 cut(s)	795, 1058, 1195
Bst2BI	CACGAG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	262, 1095, 1317
BstBI	TTCGAA	1 cut(s)	921
BstC8I	GCNNGC	4 cut(s)	363, 874, 1119, 1234
BstDEI	CTNAG	7 cut(s)	106, 128, 191, 890, 956, 998, 1112
BstDSI	CCRYGG	1 cut(s)	1058
BstF5I	GGATG	2 cut(s)	90, 1074
BstHHI	GCGC	1 cut(s)	516
BstMAI	GTCTC	5 cut(s)	187, 879, 916, 1244, 1294
BstMWI	GCNNNNNNNGC	4 cut(s)	520, 590, 781, 829
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstSFI	CTRYAG	2 cut(s)	591, 880
BstV1I	GCAGC	4 cut(s)	301, 796, 856, 1014
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	3 cut(s)	16, 562, 1053
BstXI	CCANNNNNNTGG	1 cut(s)	1065
BstYI	RGATCY	3 cut(s)	16, 562, 1053
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	448, 838, 1121
BtgI	CCRYGG	1 cut(s)	1058
BtsCI	GGATG	2 cut(s)	90, 1074
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	3 cut(s)	72, 167, 839
Cac8I	GCNNGC	4 cut(s)	363, 874, 1119, 1234
CciI	TCATGA	2 cut(s)	114, 1131
CfoI	GCGC	1 cut(s)	516
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	1220
CviAII	CATG	8 cut(s)	115, 248, 571, 602, 625, 931, 1059, 1132
CviQI	GTAC	1 cut(s)	1220
DdeI	CTNAG	7 cut(s)	106, 128, 191, 890, 956, 998, 1112
EaeI	YGGCCR	2 cut(s)	836, 1119
EciI	GGCGGA	1 cut(s)	1251
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	3 cut(s)	795, 1058, 1195
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	96, 196
EcoICRI	GAGCTC	1 cut(s)	538
EcoT14I	CCWWGG	3 cut(s)	795, 1058, 1195
EcoT38I	GRGCYC	1 cut(s)	540
ErhI	CCWWGG	3 cut(s)	795, 1058, 1195
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	8 cut(s)	118, 251, 574, 605, 628, 934, 1062, 1135
FaqI	GGGAC	2 cut(s)	1034, 1300
FatI	CATG	8 cut(s)	114, 247, 570, 601, 624, 930, 1058, 1131
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	315, 785, 870, 1003
FokI	GGATG	2 cut(s)	97, 1081
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	4 cut(s)	315, 785, 870, 1003
FspBI	CTAG	2 cut(s)	494, 1161
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	4 cut(s)	315, 785, 870, 1003
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	448, 838, 1121
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	8 cut(s)	118, 251, 574, 605, 628, 934, 1062, 1135
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	4 cut(s)	331, 725, 1200, 1244
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	112, 607, 728
Hpy166II	GTNNAC	1 cut(s)	1222
Hpy188III	TCNNGA	8 cut(s)	115, 152, 268, 280, 709, 817, 1132, 1173
Hpy8I	GTNNAC	1 cut(s)	1222
HpyAV	CCTTC	5 cut(s)	71, 75, 133, 928, 1273
HpyCH4III	ACNGT	3 cut(s)	262, 1095, 1317
HpyCH4V	TGCA	7 cut(s)	317, 383, 593, 611, 876, 1156, 1232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	520, 590, 781, 829
HpyF3I	CTNAG	7 cut(s)	106, 128, 191, 890, 956, 998, 1112
Hsp92II	CATG	8 cut(s)	118, 251, 574, 605, 628, 934, 1062, 1135
HspAI	GCGC	1 cut(s)	514
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	937, 1197, 1270
Lsp1109I	GCAGC	4 cut(s)	301, 796, 856, 1014
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	494, 1161
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	5 cut(s)	107, 283, 935, 972, 1291
MflI	RGATCY	3 cut(s)	16, 562, 1053
MhlI	GDGCHC	1 cut(s)	540
MlsI	TGGCCA	2 cut(s)	838, 1121
MluCI	AATT	4 cut(s)	338, 531, 703, 769
MluNI	TGGCCA	2 cut(s)	838, 1121
MlyI	GAGTC	3 cut(s)	340, 734, 1209
MmeI	TCCRAC	1 cut(s)	428
Mox20I	TGGCCA	2 cut(s)	838, 1121
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	2 cut(s)	838, 1121
MseI	TTAA	3 cut(s)	234, 738, 1296
MslI	CAYNNNNRTG	2 cut(s)	246, 1063
Msp20I	TGGCCA	2 cut(s)	838, 1121
MspA1I	CMGCKG	2 cut(s)	314, 787
MspI	CCGG	1 cut(s)	362
Mva1269I	GAATGC	2 cut(s)	166, 1172
MwoI	GCNNNNNNNGC	4 cut(s)	520, 590, 781, 829
NaeI	GCCGGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	1058
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	8 cut(s)	118, 251, 574, 605, 628, 934, 1062, 1135
NlaIV	GGNNCC	1 cut(s)	939
NmuCI	GTSAC	1 cut(s)	35
NspV	TTCGAA	1 cut(s)	921
PagI	TCATGA	2 cut(s)	114, 1131
PctI	GAATGC	2 cut(s)	166, 1172
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	1244
PkrI	GCNGC	4 cut(s)	316, 786, 871, 1004
PleI	GAGTC	3 cut(s)	339, 733, 1208
PpsI	GAGTC	3 cut(s)	339, 733, 1208
PshAI	GACNNNNGTC	1 cut(s)	1080
Psp124BI	GAGCTC	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	939
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	3 cut(s)	16, 562, 1053
PvuII	CAGCTG	2 cut(s)	314, 787
RsaI	GTAC	1 cut(s)	1221
RsaNI	GTAC	1 cut(s)	1220
RseI	CAYNNNNRTG	2 cut(s)	246, 1063
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	3 cut(s)	234, 738, 1296
SatI	GCNGC	4 cut(s)	315, 785, 870, 1003
Sau96I	GGNCC	1 cut(s)	446
SbfI	CCTGCAGG	1 cut(s)	595
SchI	GAGTC	3 cut(s)	340, 734, 1209
SdaI	CCTGCAGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	2 cut(s)	591, 880
SfuI	TTCGAA	1 cut(s)	921
SmiMI	CAYNNNNRTG	2 cut(s)	246, 1063
SmlI	CTYRAG	1 cut(s)	1171
SmoI	CTYRAG	1 cut(s)	1171
SpeI	ACTAGT	1 cut(s)	493
Sse8387I	CCTGCAGG	1 cut(s)	595
Sse9I	AATT	4 cut(s)	338, 531, 703, 769
SsiI	CCGC	4 cut(s)	389, 479, 830, 1236
SspMI	CTAG	2 cut(s)	494, 1161
SstI	GAGCTC	1 cut(s)	540
StyI	CCWWGG	3 cut(s)	795, 1058, 1195
TaaI	ACNGT	3 cut(s)	262, 1095, 1317
TaqI	TCGA	7 cut(s)	141, 153, 287, 639, 681, 921, 1266
TasI	AATT	4 cut(s)	338, 531, 703, 769
TatI	WGTACW	1 cut(s)	1219
TfiI	GAWTC	1 cut(s)	1244
Tru1I	TTAA	3 cut(s)	234, 738, 1296
Tru9I	TTAA	3 cut(s)	234, 738, 1296
TscAI	CASTG	3 cut(s)	79, 174, 839
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	314, 784, 869, 1002
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	1304
TspRI	CASTG	3 cut(s)	79, 174, 839
XapI	RAATTY	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	2 cut(s)	494, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.