Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

33297875 .. 33301000

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39070.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCCACAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAGGAACTTGAAGCTTCTCTCGAAAAGAATGGTTCATTGGAGAAAGAAAACCACGAGCTGAGACAAGAGGTGTCTCGTCTCAGAGATCAGATAACTTCCCTAAAAGCACACAATCATGAGAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCAGCAAAAGAGAAAATGGTTCCAAAGTTAGACTTCACAGAGGAAAAGCCAGCAACGATATTGACAAATGCACCACCACCTCCAACTCCTCCTGCTGCGATCGATGAGGTAAAGGGAAATAAAGGGCCGTCAGCACCAGCACCGCCACCTCCACCACCGCCCTCAAAGTCACTACTCAGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTATACCGATCACTTACAAGGAAAGATTCAAACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCAAAGAGGTGGAGTCAGCAAAATTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTAGATGAAAGAGCTGTATTGAAGCATTTTCCACGGTGGCCAGAACGAAAAGCCGACACATTGCGAGAAGCTGCCTGCAACTACAGAGACCTCAGAAACCTCAAATCCGAAGTCTTGTCATTCGGAGACAACACGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATTGAAGCATTACAAGACAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACTAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGGCTGGTCGGACAGATGAAAGTAAGTTCTCTAAGGTTGGCCAAGGAGTTCATGAAAAGGATTATCAGAGAAGTCCAATCTAGTGAATGCTCAAGAGTAGAAAACCTTGTGCTTCAGGGAGTCCGTTTTGCTTTCCGAGTGCACCAGTTTGCAGGTGGTTTTGATGCAGAGACTATACTTTCCTTCGAGGAGCTAAAGAAGATAGGCACGGATATCAAGAGGCAAGCCAACAAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

46.55

Weight (kDa)

9.05

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1127
Acc36I	ACCTGC	1 cut(s)	1127
AciI	CCGC	2 cut(s)	368, 383
AclWI	GGATC	2 cut(s)	690, 952
AcoI	YGGCCR	2 cut(s)	740, 1023
AcsI	RAATTY	2 cut(s)	607, 638
AcuI	CTGAAG	1 cut(s)	1082
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	5 cut(s)	56, 408, 471, 724, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	8 cut(s)	59, 103, 442, 569, 691, 716, 773, 1177
AluI	AGCT	8 cut(s)	59, 103, 442, 569, 691, 716, 773, 1177
Alw21I	GWGCWC	1 cut(s)	1128
Alw26I	GTCTC	6 cut(s)	100, 123, 128, 783, 822, 1148
Alw44I	GTGCAC	1 cut(s)	1124
AlwI	GGATC	2 cut(s)	690, 952
AoxI	GGCC	3 cut(s)	350, 740, 1023
ApaLI	GTGCAC	1 cut(s)	1124
ApeKI	GCWGC	5 cut(s)	227, 320, 688, 773, 906
ApoI	RAATTY	2 cut(s)	607, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	798, 830
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	25, 511
BaeGI	GKGCMC	1 cut(s)	1128
BalI	TGGCCA	2 cut(s)	742, 1025
BauI	CACGAG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	1128
BbvI	GCAGC	5 cut(s)	239, 307, 700, 760, 918
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	337, 405
BciVI	GTATCC	1 cut(s)	199
BclI	TGATCA	2 cut(s)	30, 615
BcoDI	GTCTC	6 cut(s)	100, 123, 128, 783, 822, 1148
BfaI	CTAG	3 cut(s)	933, 1065, 1222
BfmI	CTRYAG	2 cut(s)	495, 784
BfuAI	ACCTGC	1 cut(s)	1127
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	5 cut(s)	228, 321, 689, 774, 907
BlsI	GCNGC	5 cut(s)	229, 322, 690, 775, 908
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	246, 843
BmsI	GCATC	1 cut(s)	1138
BpuEI	CTTGAG	1 cut(s)	1060
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	783
BsaJI	CCNNGG	4 cut(s)	699, 734, 962, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	1129
Bse3DI	GCAATG	2 cut(s)	648, 761
Bse8I	GATNNNNATC	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	4 cut(s)	699, 734, 962, 1026
BseGI	GGATG	1 cut(s)	978
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	2 cut(s)	648, 761
BseMII	CTCAG	6 cut(s)	33, 55, 95, 139, 415, 808
BseNI	ACTGG	1 cut(s)	1129
BseRI	GAGGAG	2 cut(s)	303, 1187
BseSI	GKGCMC	1 cut(s)	1128
BseXI	GCAGC	5 cut(s)	239, 307, 700, 760, 918
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	352, 742, 1025
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	6 cut(s)	100, 123, 128, 783, 822, 1148
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	938
BsmI	GAATGC	1 cut(s)	1076
BsnI	GGCC	3 cut(s)	352, 742, 1025
Bso31I	GGTCTC	1 cut(s)	783
Bsp1286I	GDGCHC	1 cut(s)	1128
Bsp143I	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
Bsp19I	CCATGG	1 cut(s)	962
BspACI	CCGC	2 cut(s)	368, 383
BspANI	GGCC	3 cut(s)	352, 742, 1025
BspCNI	CTCAG	6 cut(s)	32, 54, 96, 138, 414, 807
BspDI	ATCGAT	1 cut(s)	327
BspHI	TCATGA	3 cut(s)	27, 160, 1035
BspLI	GGNNCC	2 cut(s)	246, 843
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	1127
BspPI	GGATC	2 cut(s)	690, 952
BspTNI	GGTCTC	1 cut(s)	783
BsrDI	GCAATG	2 cut(s)	648, 761
BsrI	ACTGG	1 cut(s)	1129
BssECI	CCNNGG	4 cut(s)	699, 734, 962, 1026
BssMI	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	3 cut(s)	699, 962, 1026
Bst2BI	CACGAG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	175, 738
BstC8I	GCNNGC	3 cut(s)	276, 778, 1209
BstDEI	CTNAG	9 cut(s)	19, 41, 104, 125, 401, 794, 860, 902, 1016
BstDSI	CCRYGG	2 cut(s)	734, 962
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	978
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	9 cut(s)	27, 33, 133, 327, 452, 618, 685, 852, 960
BstMAI	GTCTC	6 cut(s)	100, 123, 128, 783, 822, 1148
BstMBI	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 494, 685
BstSFI	CTRYAG	2 cut(s)	495, 784
BstSLI	GKGCMC	1 cut(s)	1128
BstV1I	GCAGC	5 cut(s)	239, 307, 700, 760, 918
BstX2I	RGATCY	1 cut(s)	957
BstXI	CCANNNNNNTGG	1 cut(s)	969
BstYI	RGATCY	1 cut(s)	957
Bsu15I	ATCGAT	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	352, 742, 1025
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	2 cut(s)	734, 962
BtsCI	GGATG	1 cut(s)	978
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	3 cut(s)	276, 778, 1209
CciI	TCATGA	3 cut(s)	27, 160, 1035
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	327
CviAII	CATG	7 cut(s)	28, 161, 475, 506, 529, 963, 1036
DdeI	CTNAG	9 cut(s)	19, 41, 104, 125, 401, 794, 860, 902, 1016
DpnI	GATC	9 cut(s)	26, 32, 132, 326, 451, 617, 684, 851, 959
DpnII	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
EaeI	YGGCCR	2 cut(s)	740, 1023
Eco130I	CCWWGG	3 cut(s)	699, 962, 1026
Eco31I	GGTCTC	1 cut(s)	783
Eco32I	GATATC	1 cut(s)	1198
Eco57I	CTGAAG	1 cut(s)	1082
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	1198
EcoT14I	CCWWGG	3 cut(s)	699, 962, 1026
ErhI	CCWWGG	3 cut(s)	699, 962, 1026
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	7 cut(s)	31, 164, 478, 509, 532, 966, 1039
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	7 cut(s)	27, 160, 474, 505, 528, 962, 1035
FbaI	TGATCA	2 cut(s)	30, 615
Fnu4HI	GCNGC	5 cut(s)	228, 321, 689, 774, 907
FokI	GGATG	1 cut(s)	985
Fsp4HI	GCNGC	5 cut(s)	228, 321, 689, 774, 907
FspBI	CTAG	3 cut(s)	933, 1065, 1222
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	5 cut(s)	228, 321, 689, 774, 907
HaeIII	GGCC	3 cut(s)	352, 742, 1025
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	7 cut(s)	31, 164, 478, 509, 532, 966, 1039
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	3 cut(s)	467, 629, 1104
HphI	GGTGA	2 cut(s)	25, 511
Hpy166II	GTNNAC	1 cut(s)	1126
Hpy188III	TCNNGA	9 cut(s)	28, 65, 161, 181, 193, 613, 1036, 1077, 1201
Hpy8I	GTNNAC	1 cut(s)	1126
HpyAV	CCTTC	3 cut(s)	46, 832, 1177
HpyCH4III	ACNGT	2 cut(s)	175, 738
HpyCH4V	TGCA	7 cut(s)	296, 497, 515, 780, 1126, 1136, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 494, 685
HpyF3I	CTNAG	9 cut(s)	19, 41, 104, 125, 401, 794, 860, 902, 1016
Hsp92II	CATG	7 cut(s)	31, 164, 478, 509, 532, 966, 1039
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	2 cut(s)	30, 615
Kzo9I	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
LmnI	GCTCC	2 cut(s)	841, 1174
Lsp1109I	GCAGC	5 cut(s)	239, 307, 700, 760, 918
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	3 cut(s)	933, 1065, 1222
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	9 cut(s)	26, 32, 132, 326, 451, 617, 684, 851, 959
MboI	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
MboII	GAAGA	3 cut(s)	196, 876, 1195
MflI	RGATCY	1 cut(s)	957
MhlI	GDGCHC	1 cut(s)	1128
MlsI	TGGCCA	2 cut(s)	742, 1025
MluCI	AATT	5 cut(s)	435, 607, 638, 673, 867
MluNI	TGGCCA	2 cut(s)	742, 1025
MlyI	GAGTC	2 cut(s)	638, 1113
MmeI	TCCRAC	2 cut(s)	332, 973
Mox20I	TGGCCA	2 cut(s)	742, 1025
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	2 cut(s)	742, 1025
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	2 cut(s)	159, 967
Msp20I	TGGCCA	2 cut(s)	742, 1025
MspA1I	CMGCKG	1 cut(s)	691
Mva1269I	GAATGC	1 cut(s)	1076
MwoI	GCNNNNNNNGC	3 cut(s)	424, 494, 685
NcoI	CCATGG	1 cut(s)	962
NdeII	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
NlaIII	CATG	7 cut(s)	31, 164, 478, 509, 532, 966, 1039
NlaIV	GGNNCC	2 cut(s)	246, 843
NmuCI	GTSAC	1 cut(s)	393
PagI	TCATGA	3 cut(s)	27, 160, 1035
PaqCI	CACCTGC	1 cut(s)	1127
PctI	GAATGC	1 cut(s)	1076
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	229, 322, 690, 775, 908
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	2 cut(s)	637, 1112
PpsI	GAGTC	2 cut(s)	637, 1112
PspN4I	GGNNCC	2 cut(s)	246, 843
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	957
PvuI	CGATCG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	691
RseI	CAYNNNNRTG	2 cut(s)	159, 967
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	5 cut(s)	228, 321, 689, 774, 907
Sau3AI	GATC	9 cut(s)	24, 30, 130, 324, 449, 615, 682, 849, 957
Sau96I	GGNCC	1 cut(s)	350
SbfI	CCTGCAGG	1 cut(s)	499
SchI	GAGTC	2 cut(s)	638, 1113
SdaI	CCTGCAGG	1 cut(s)	499
SduI	GDGCHC	1 cut(s)	1128
SfaNI	GCATC	1 cut(s)	1138
SfcI	CTRYAG	2 cut(s)	495, 784
SmiMI	CAYNNNNRTG	2 cut(s)	159, 967
SmlI	CTYRAG	1 cut(s)	1075
SmoI	CTYRAG	1 cut(s)	1075
Sse8387I	CCTGCAGG	1 cut(s)	499
Sse9I	AATT	5 cut(s)	435, 607, 638, 673, 867
SsiI	CCGC	2 cut(s)	368, 383
SspMI	CTAG	3 cut(s)	933, 1065, 1222
StyI	CCWWGG	3 cut(s)	699, 962, 1026
TaaI	ACNGT	2 cut(s)	175, 738
TaqI	TCGA	6 cut(s)	66, 200, 327, 543, 585, 1170
TasI	AATT	5 cut(s)	435, 607, 638, 673, 867
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	5 cut(s)	227, 320, 688, 773, 906
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	9 cut(s)	27, 69, 494, 543, 592, 723, 1016, 1024, 1052
TspGWI	ACGGA	2 cut(s)	1097, 1208
VneI	GTGCAC	1 cut(s)	1124
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	2 cut(s)	607, 638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1136
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	933, 1065, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.