Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

69952235 .. 69961511

Gene Structure 9277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG503500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAAGAGGAACAAGATCCAAAAGAACCTCTATGTCACACTCCTATCTCCTTGTGTCATCGTCCTTCTTACACTGAAGGCAGGATGCCACAAGAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAAGAACTCGAAGCTTCTCTCGAAAAGAATGCTTCACTGGAGAAAGAAAACCACGAGCTGAGACGAGAAGTTTCTCGCTTCAGAGATCAGATAACTTCCCTTAAAGCACACAACCATGAGAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCTGCAAAAGAGAAAATGAGTCCGAAATTAGACTTCACAGAGGAAAAGCCGGCAACGACATTGACAAATGCACCACCGCCCAAACCACCTCCAACTCCTCCTGCTTCATTCAAGGAGGTAAAGGGAAATAAAGGGCCGTCAGCACCAGCACCAGCACCTCCACCTCCACCACCGCCCTCAAAATCACTAGTCGGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTCTACCGATCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCGGTGAGGTGGAGTCAGCAACCTTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTTGATGAAAGAGCAGTCTTGAAGCATTTTCCGCAGTGGCCAGAACGAAAAGCCGACACTCTGCGAGAAGCTGCTTGCAACTACAGAGACCTCAGAAACCTCAAATCCGAAGTCTCATCATTCGAAGACAGCATGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATAGAAGCATTACAAGATAGGCAAGCATGCATGTTTATGTCCAAAAGCTTAAATTTTACTGTTCCATTCATTGTAGGGAACGAAATATTAAGGTTCAATTTTGACAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACCAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGTCTGATCGGACAGGTAGGTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

45.76

Weight (kDa)

7.11

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	389, 485, 836
AclWI	GGATC	4 cut(s)	11, 563, 792, 1141
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	709, 1021
AcuI	CTGAAG	2 cut(s)	96, 196
AgsI	TTSAA	4 cut(s)	424, 510, 826, 1066
AhlI	ACTAGT	1 cut(s)	499
AluBI	AGCT	8 cut(s)	146, 190, 314, 544, 671, 793, 875, 1017
AluI	AGCT	8 cut(s)	146, 190, 314, 544, 671, 793, 875, 1017
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	3 cut(s)	187, 885, 922
AlwI	GGATC	4 cut(s)	11, 563, 792, 1141
AoxI	GGCC	2 cut(s)	446, 842
ApeKI	GCWGC	4 cut(s)	314, 790, 875, 1095
ApoI	RAATTY	2 cut(s)	709, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	900, 932
Asp700I	GAANNNNTTC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	112, 613, 734
AsuII	TTCGAA	1 cut(s)	927
BalI	TGGCCA	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	546
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	301, 802, 862, 1107
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	2 cut(s)	433, 507
BcgI	CGANNNNNNTGC	2 cut(s)	143, 177
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	187, 885, 922
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	597, 886
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	4 cut(s)	315, 791, 876, 1096
BlsI	GCNGC	4 cut(s)	316, 792, 877, 1097
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	945
BmsI	GCATC	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	1173
BpiI	GAAGAC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	927
BsaBI	GATNNNNATC	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	2 cut(s)	801, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	801, 1151
BseGI	GGATG	2 cut(s)	90, 1167
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	4 cut(s)	120, 142, 182, 910
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	4 cut(s)	301, 802, 862, 1107
BshFI	GGCC	2 cut(s)	448, 844
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	1127
BsmAI	GTCTC	3 cut(s)	187, 885, 922
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	1127
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	448, 844
Bso31I	GGTCTC	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	927
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp19I	CCATGG	1 cut(s)	1151
BspACI	CCGC	3 cut(s)	389, 485, 836
BspANI	GGCC	2 cut(s)	448, 844
BspCNI	CTCAG	4 cut(s)	119, 141, 183, 909
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	945
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	4 cut(s)	11, 563, 792, 1141
BspT104I	TTCGAA	1 cut(s)	927
BspTNI	GGTCTC	1 cut(s)	885
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	801, 1151
BssSI	CACGAG	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	801, 1151
Bst2BI	CACGAG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	262, 1030
BstBI	TTCGAA	1 cut(s)	927
BstC8I	GCNNGC	4 cut(s)	363, 880, 993, 997
BstDEI	CTNAG	6 cut(s)	106, 128, 191, 896, 962, 1091
BstDSI	CCRYGG	1 cut(s)	1151
BstF5I	GGATG	2 cut(s)	90, 1167
BstHHI	GCGC	1 cut(s)	522
BstMAI	GTCTC	3 cut(s)	187, 885, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	526, 596, 787, 835
BstNSI	RCATGY	2 cut(s)	999, 1003
BstPAI	GACNNNNGTC	1 cut(s)	1173
BstSFI	CTRYAG	2 cut(s)	597, 886
BstV1I	GCAGC	4 cut(s)	301, 802, 862, 1107
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	3 cut(s)	16, 568, 1146
BstXI	CCANNNNNNTGG	1 cut(s)	1158
BstYI	RGATCY	3 cut(s)	16, 568, 1146
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	448, 844
BtgI	CCRYGG	1 cut(s)	1151
BtsCI	GGATG	2 cut(s)	90, 1167
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	3 cut(s)	72, 167, 845
Cac8I	GCNNGC	4 cut(s)	363, 880, 993, 997
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	446
CviAII	CATG	9 cut(s)	115, 248, 577, 608, 631, 937, 996, 1000, 1152
DdeI	CTNAG	6 cut(s)	106, 128, 191, 896, 962, 1091
EaeI	YGGCCR	1 cut(s)	842
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	801, 1151
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	885
Eco53kI	GAGCTC	1 cut(s)	544
Eco57I	CTGAAG	2 cut(s)	96, 196
EcoICRI	GAGCTC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	801, 1151
EcoT22I	ATGCAT	1 cut(s)	1001
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	801, 1151
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	9 cut(s)	118, 251, 580, 611, 634, 940, 999, 1003, 1155
FaqI	GGGAC	1 cut(s)	1127
FatI	CATG	9 cut(s)	114, 247, 576, 607, 630, 936, 995, 999, 1151
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	315, 791, 876, 1096
FokI	GGATG	2 cut(s)	97, 1174
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	315, 791, 876, 1096
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	315, 791, 876, 1096
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	448, 844
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	9 cut(s)	118, 251, 580, 611, 634, 940, 999, 1003, 1155
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HindIII	AAGCTT	2 cut(s)	144, 1015
HinfI	GANTC	2 cut(s)	331, 731
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	112, 613, 734
Hpy188III	TCNNGA	6 cut(s)	115, 152, 268, 280, 715, 823
HpyAV	CCTTC	4 cut(s)	71, 75, 133, 934
HpyCH4III	ACNGT	2 cut(s)	262, 1030
HpyCH4V	TGCA	6 cut(s)	317, 383, 599, 617, 882, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	526, 596, 787, 835
HpyF3I	CTNAG	6 cut(s)	106, 128, 191, 896, 962, 1091
Hsp92II	CATG	9 cut(s)	118, 251, 580, 611, 634, 940, 999, 1003, 1155
HspAI	GCGC	1 cut(s)	520
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	943
Lsp1109I	GCAGC	4 cut(s)	301, 802, 862, 1107
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	4 cut(s)	107, 283, 941, 978
MflI	RGATCY	3 cut(s)	16, 568, 1146
MhlI	GDGCHC	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	844
MluCI	AATT	6 cut(s)	338, 537, 709, 775, 1021, 1066
MluNI	TGGCCA	1 cut(s)	844
MlyI	GAGTC	2 cut(s)	340, 740
MmeI	TCCRAC	1 cut(s)	428
Mox20I	TGGCCA	1 cut(s)	844
Mph1103I	ATGCAT	1 cut(s)	1001
MroNI	GCCGGC	1 cut(s)	361
MroXI	GAANNNNTTC	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	844
MseI	TTAA	4 cut(s)	234, 744, 1019, 1058
MslI	CAYNNNNRTG	3 cut(s)	246, 1004, 1156
Msp20I	TGGCCA	1 cut(s)	844
MspA1I	CMGCKG	2 cut(s)	314, 793
MspI	CCGG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	526, 596, 787, 835
NaeI	GCCGGC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	1151
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	9 cut(s)	118, 251, 580, 611, 634, 940, 999, 1003, 1155
NlaIV	GGNNCC	1 cut(s)	945
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	1001
NspI	RCATGY	2 cut(s)	999, 1003
NspV	TTCGAA	1 cut(s)	927
PaeI	GCATGC	1 cut(s)	999
PagI	TCATGA	1 cut(s)	114
PctI	GAATGC	1 cut(s)	166
PdiI	GCCGGC	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	316, 792, 877, 1097
PleI	GAGTC	2 cut(s)	339, 739
PpsI	GAGTC	2 cut(s)	339, 739
PshAI	GACNNNNGTC	1 cut(s)	1173
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	945
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	3 cut(s)	16, 568, 1146
PvuII	CAGCTG	2 cut(s)	314, 793
RseI	CAYNNNNRTG	3 cut(s)	246, 1004, 1156
SacI	GAGCTC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	234, 744, 1019, 1058
SatI	GCNGC	4 cut(s)	315, 791, 876, 1096
Sau96I	GGNCC	1 cut(s)	446
SbfI	CCTGCAGG	1 cut(s)	601
SchI	GAGTC	2 cut(s)	340, 740
SdaI	CCTGCAGG	1 cut(s)	601
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	2 cut(s)	597, 886
SfuI	TTCGAA	1 cut(s)	927
SmiMI	CAYNNNNRTG	3 cut(s)	246, 1004, 1156
SpeI	ACTAGT	1 cut(s)	499
SphI	GCATGC	1 cut(s)	999
Sse8387I	CCTGCAGG	1 cut(s)	601
Sse9I	AATT	6 cut(s)	338, 537, 709, 775, 1021, 1066
SsiI	CCGC	3 cut(s)	389, 485, 836
SspI	AATATT	1 cut(s)	1056
SspMI	CTAG	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	801, 1151
TaaI	ACNGT	2 cut(s)	262, 1030
TaqI	TCGA	6 cut(s)	141, 153, 287, 645, 687, 927
TasI	AATT	6 cut(s)	338, 537, 709, 775, 1021, 1066
Tru1I	TTAA	4 cut(s)	234, 744, 1019, 1058
Tru9I	TTAA	4 cut(s)	234, 744, 1019, 1058
TscAI	CASTG	3 cut(s)	79, 174, 845
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	314, 790, 875, 1095
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	9 cut(s)	17, 114, 408, 596, 645, 694, 825, 953, 1027
TspRI	CASTG	3 cut(s)	79, 174, 845
XapI	RAATTY	2 cut(s)	709, 1021
XceI	RCATGY	2 cut(s)	999, 1003
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.