Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

55872833 .. 55873639

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTTGGCCGCCTGAACTCGTGCAAAGCCTTTAACCATCAATCCTTCGTGGGATTCTTTCATTTGGTCTGGAGGCTTGCAGGGATACTTCAGATTCAAGAGTGTTCGGAGGAGAGGTTTCTGTTTATGTTTTTGAATGCAAATGATGTCAATTGGATCAGGAGAGGTGGGTCGTGGAGTTTTAACAGGGAGCTGGTGGTTCTAAATGATTATGACGGATTCTCGCTCATTTTTAAGGTGTCACTGATGCATGTGAGGAACTGGGTGCAGATCTTTACACTACCTCTGGCTTACATGACGATGGCCACTATCTCTTTAATTGCAGAAACTCTGGGAAAGGTGATTGTAGTGGATCAGAGGGCATTCCAGGATGGGAAGTGTAGGGTGGTCTGTCTTTTGCTCAACCACGTCCGACCATTCTTGTCCGGTCCTACGCAGCACAATGATGCAACTGCTATTAGATTGGTTACTAGTGGTGCAGCAGTGAGTGCATCTTTTCCTTCTATGGTGTTTCGGGCTAATGCTGCTCCATCGTGGTCACTAACTTTCAAGGTTCCCTCAAAGTTCATGAAAGCGATGGCGCCCAAGCGCTCAATGGTGATCAAAGCAACAAAGAAAAGTTCGATAAAGATAGAGGAGTTGCCACGGCTTACTGGGATGCGTAGAGACAGAGAGGATGATGATGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

26.12

Weight (kDa)

9.8

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	164, 360
AcoI	YGGCCR	2 cut(s)	7, 303
AcuI	CTGAAG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	581
AfeI	AGCGCT	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	98, 136, 550
AhlI	ACTAGT	1 cut(s)	470
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	164, 360
Aor51HI	AGCGCT	1 cut(s)	590
AoxI	GGCC	2 cut(s)	7, 303
ApeKI	GCWGC	3 cut(s)	436, 479, 524
AspLEI	GCGC	2 cut(s)	583, 591
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	352, 610
AvaII	GGWCC	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	448, 491, 511
BccI	CCATC	5 cut(s)	45, 295, 365, 538, 571
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	660
BcuI	ACTAGT	1 cut(s)	470
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	2 cut(s)	584, 592
BfuI	GTATCC	1 cut(s)	78
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	4 cut(s)	10, 437, 480, 525
BlsI	GCNGC	4 cut(s)	11, 438, 481, 526
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	555, 582
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	2 cut(s)	271, 663
BmsI	GCATC	4 cut(s)	237, 436, 500, 648
BmuI	ACTGGG	2 cut(s)	271, 663
BpmI	CTGGAG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse1I	ACTGG	2 cut(s)	266, 658
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	3 cut(s)	376, 663, 682
BseNI	ACTGG	2 cut(s)	266, 658
BseRI	GAGGAG	2 cut(s)	125, 650
BseXI	GCAGC	3 cut(s)	448, 491, 511
BsgI	GTGCAG	2 cut(s)	287, 498
BshFI	GGCC	2 cut(s)	9, 305
BshNI	GGYRCC	1 cut(s)	580
BsiSI	CCGG	1 cut(s)	426
BsmAI	GTCTC	1 cut(s)	660
BsmI	GAATGC	2 cut(s)	142, 362
BsnI	GGCC	2 cut(s)	9, 305
Bsp143I	GATC	4 cut(s)	156, 270, 352, 600
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	9, 305
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	555, 582
BspPI	GGATC	2 cut(s)	164, 360
BspT107I	GGYRCC	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	266, 658
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	4 cut(s)	156, 270, 352, 600
BssNI	GRCGYC	1 cut(s)	581
BssSI	CACGAG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	376, 663, 682
BstH2I	RGCGCY	2 cut(s)	584, 592
BstHHI	GCGC	2 cut(s)	583, 591
BstKTI	GATC	4 cut(s)	159, 273, 355, 603
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	156, 270, 352, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 524
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	448, 491, 511
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	9, 305
BtgI	CCRYGG	1 cut(s)	644
BtgZI	GCGATG	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	3 cut(s)	376, 663, 682
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	242, 489
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	2 cut(s)	583, 591
Cfr13I	GGNCC	1 cut(s)	428
CviAII	CATG	3 cut(s)	251, 295, 568
CviJI	RGCY	8 cut(s)	9, 29, 76, 193, 290, 305, 518, 649
CviKI_1	RGCY	8 cut(s)	9, 29, 76, 193, 290, 305, 518, 649
DinI	GGCGCC	1 cut(s)	582
DpnI	GATC	4 cut(s)	158, 272, 354, 602
DpnII	GATC	4 cut(s)	156, 270, 352, 600
EaeI	YGGCCR	2 cut(s)	7, 303
Eco47I	GGWCC	1 cut(s)	428
Eco47III	AGCGCT	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	582
EheI	GGCGCC	1 cut(s)	582
FaeI	CATG	3 cut(s)	254, 298, 571
FaiI	YATR	6 cut(s)	128, 213, 252, 296, 506, 569
FatI	CATG	3 cut(s)	250, 294, 567
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	10, 437, 480, 525
FokI	GGATG	3 cut(s)	383, 670, 689
Fsp4HI	GCNGC	4 cut(s)	10, 437, 480, 525
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	582, 590
GluI	GCNGC	4 cut(s)	10, 437, 480, 525
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	2 cut(s)	584, 592
HaeIII	GGCC	2 cut(s)	9, 305
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	2 cut(s)	583, 591
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	254, 298, 571
Hin6I	GCGC	2 cut(s)	581, 589
HinP1I	GCGC	2 cut(s)	581, 589
HinfI	GANTC	3 cut(s)	54, 94, 219
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	352, 610
Hpy188I	TCNGA	4 cut(s)	93, 109, 357, 413
Hpy188III	TCNNGA	4 cut(s)	70, 98, 160, 568
HpyAV	CCTTC	2 cut(s)	55, 510
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	9 cut(s)	24, 80, 140, 250, 268, 323, 449, 479, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 524
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	254, 298, 571
HspAI	GCGC	2 cut(s)	581, 589
KasI	GGCGCC	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	156, 270, 352, 600
LmnI	GCTCC	2 cut(s)	190, 532
Lsp1109I	GCAGC	3 cut(s)	448, 491, 511
LweI	GCATC	4 cut(s)	237, 436, 500, 648
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	240, 466, 537
MalI	GATC	4 cut(s)	158, 272, 354, 602
MboI	GATC	4 cut(s)	156, 270, 352, 600
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	270
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	151, 318
MluNI	TGGCCA	1 cut(s)	305
Mly113I	GGCGCC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	436
Mox20I	TGGCCA	1 cut(s)	305
Mph1103I	ATGCAT	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	4 cut(s)	33, 183, 234, 317
MslI	CAYNNNNRTG	2 cut(s)	299, 444
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	151
Mva1269I	GAATGC	2 cut(s)	142, 362
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	488, 524
NarI	GGCGCC	1 cut(s)	581
NdeII	GATC	4 cut(s)	156, 270, 352, 600
NlaIII	CATG	3 cut(s)	254, 298, 571
NlaIV	GGNNCC	2 cut(s)	555, 582
NmuCI	GTSAC	2 cut(s)	240, 537
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	254
PagI	TCATGA	1 cut(s)	567
PctI	GAATGC	2 cut(s)	142, 362
PfeI	GAWTC	3 cut(s)	54, 94, 219
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	11, 438, 481, 526
PluTI	GGCGCC	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	555, 582
PspPI	GGNCC	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	270
RseI	CAYNNNNRTG	2 cut(s)	299, 444
SaqAI	TTAA	4 cut(s)	33, 183, 234, 317
SatI	GCNGC	4 cut(s)	10, 437, 480, 525
Sau3AI	GATC	4 cut(s)	156, 270, 352, 600
Sau96I	GGNCC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	368
SetI	ASST	9 cut(s)	119, 169, 195, 240, 286, 342, 411, 555, 690
SfaNI	GCATC	4 cut(s)	237, 436, 500, 648
SfoI	GGCGCC	1 cut(s)	582
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	299, 444
SpeI	ACTAGT	1 cut(s)	470
Sse9I	AATT	2 cut(s)	151, 318
SsiI	CCGC	1 cut(s)	10
SspDI	GGCGCC	1 cut(s)	580
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	366
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	623
TasI	AATT	2 cut(s)	151, 318
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	3 cut(s)	54, 94, 219
Tru1I	TTAA	4 cut(s)	33, 183, 234, 317
Tru9I	TTAA	4 cut(s)	33, 183, 234, 317
TscAI	CASTG	2 cut(s)	249, 489
TseFI	GTSAC	2 cut(s)	240, 537
TseI	GCWGC	3 cut(s)	436, 479, 524
Tsp45I	GTSAC	2 cut(s)	240, 537
TspDTI	ATGAA	3 cut(s)	50, 556, 584
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	2 cut(s)	249, 489
VpaK11BI	GGWCC	1 cut(s)	428
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.