Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Reverse (-)

5180863 .. 5184805

Gene Structure 3943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1065000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCCAGAAGAAGAAAGCTCCGAGATCGTCGTCTTTCTCACGAAAGAACTCGAAGCCTCTCTAGAAAAGAACGGCTCGTTGGAGAAAGAAAACCATGAGCTGAGGCAAGAAGTTGGTCGTCTCAAAGCTCAAATAACTTCCCTCAAAGCACACAACAATGAGAGGAAATCTGTGCTCTGGAAGAAGTTTCAAAGCACATTGGAGCAGACTCCAGCGACAGAGAAACCGAATCCGAAAGTAGACTTCACAGAGTCAGAAGCCACAAAGGAAAGAACGGCAGCAAGATTGTTACCAACCAATGCACCACTACCAACGCCAACGCCAAGGCCTCCTCCTCCTCCTACTTTGTTCAAGGAGGTAAAGGAAAATAAAGGGCCGTCAGCCCCAGCACCGCCGCCTCCTCCTCCGCCCTCAAAATCATCAATCGGGTCAAGAGGAGTGCGACGTGTCCCGGAAGTAATTGAGCTGTACCGTTCACTTACAAGGAAAGATGCACACATGGAGAACAAGGCCAACCCTGCAGGAGTTCATGTTTTTGCACTTACTAAGAACATGATAGGAGAAATCGAAAACCGTTCATCTTATGTTTTAGCTATAAAGTCGGAGGTCGAAACGCAAGGAGAGTTCGTAAACTTTTTGATCAGTGAGGTCGAGTCTGCAAAATTTACAAATATTGCAGATGTGGAAGCATTTGTGAACTGGCTGGATCGGCAGCTATCTTCTTTAGTCGATGAGAGAGCAGTGCTGAAGCACTTCCCGCAGTGGCCGGAACGAAAAGCAGACACGCTGCGAGAAGCCGCTTTCAGCTACAGAGACCTGAGGAATCTGAAAAACGAAGCCTCATCGTTTGAGGACAACATGAAGGAGCCATCAATCCTTGCTCTGAGAAGAATGGAAGCATTACAAGACAGGTTGGAAAGAAGTGTGAGCAGCACAGAAAGAACAAGGGAGAGTGCCAGCAAGAGATACAGGGATTTTCAGATCCCATGGGAGTGGATGCTGGACACAGGGCTGATGGGTCAGATGAAACTGAGCTCACTAAGGCTAGCCAAGGAATACATGAAGAGGATTATTAGAGATGTGGAGTCTGGCGAATGTCATAGAGAAGAAAGTCTCCTGCTTCAAGGAGTCCGTTTCGCTTTCCGGGTGCACCAGTTTGCAGGTGGTTTTGATTCGGAGACGGTTCTCGCGTTTGAGGAACTAAAGAAGATACGCACAAATAGTAAACGAAATGGCACGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

47.22

Weight (kDa)

8.69

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1151
Acc36I	ACCTGC	1 cut(s)	1151
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	1190
AciI	CCGC	5 cut(s)	392, 395, 407, 758, 798
AclWI	GGATC	2 cut(s)	714, 976
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	191, 352, 1124
AjiI	CACGTC	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	8 cut(s)	18, 100, 128, 466, 593, 715, 807, 1035
AluI	AGCT	8 cut(s)	18, 100, 128, 466, 593, 715, 807, 1035
Alw21I	GWGCWC	3 cut(s)	177, 1037, 1152
Alw26I	GTCTC	4 cut(s)	125, 807, 1118, 1172
Alw44I	GTGCAC	1 cut(s)	1148
AlwI	GGATC	2 cut(s)	714, 976
AoxI	GGCC	4 cut(s)	326, 374, 510, 764
ApaLI	GTGCAC	1 cut(s)	1148
ApeKI	GCWGC	4 cut(s)	278, 712, 787, 930
ApoI	RAATTY	1 cut(s)	662
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	452, 1145
AsuNHI	GCTAGC	1 cut(s)	1045
AxyI	CCTNAGG	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	1152
BanII	GRGCYC	1 cut(s)	1037
Bbv12I	GWGCWC	3 cut(s)	177, 1037, 1152
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	4 cut(s)	290, 724, 774, 942
BccI	CCATC	2 cut(s)	877, 1009
BceAI	ACGGC	3 cut(s)	88, 291, 361
BclI	TGATCA	1 cut(s)	639
BcnI	CCSGG	2 cut(s)	452, 1145
BcoDI	GTCTC	4 cut(s)	125, 807, 1118, 1172
BfaI	CTAG	2 cut(s)	62, 1046
BfmI	CTRYAG	2 cut(s)	519, 808
BfuAI	ACCTGC	1 cut(s)	1151
BisI	GCNGC	6 cut(s)	279, 395, 713, 788, 798, 931
BlsI	GCNGC	6 cut(s)	280, 396, 714, 789, 799, 932
Bme1390I	CCNGG	2 cut(s)	452, 1145
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	2 cut(s)	452, 1145
BmsI	GCATC	2 cut(s)	481, 987
BmtI	GCTAGC	1 cut(s)	1049
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	452, 1145
BsaI	GGTCTC	1 cut(s)	807
BsaJI	CCNNGG	3 cut(s)	323, 986, 1050
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 612, 642
Bse1I	ACTGG	2 cut(s)	704, 1153
Bse21I	CCTNAGG	1 cut(s)	818
BseDI	CCNNGG	3 cut(s)	323, 986, 1050
BseGI	GGATG	1 cut(s)	1002
BseMII	CTCAG	4 cut(s)	92, 809, 875, 1022
BseNI	ACTGG	2 cut(s)	704, 1153
BseRI	GAGGAG	6 cut(s)	321, 324, 327, 390, 393, 450
BseSI	GKGCMC	1 cut(s)	1152
BseXI	GCAGC	4 cut(s)	290, 724, 774, 942
BseYI	CCCAGC	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	1190
BshFI	GGCC	4 cut(s)	328, 376, 512, 766
BsiHKAI	GWGCWC	3 cut(s)	177, 1037, 1152
BsiSI	CCGG	3 cut(s)	452, 767, 1144
BslFI	GGGAC	1 cut(s)	434
BsmAI	GTCTC	4 cut(s)	125, 807, 1118, 1172
BsmBI	CGTCTC	2 cut(s)	125, 1172
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	4 cut(s)	328, 376, 512, 766
Bso31I	GGTCTC	1 cut(s)	807
Bsp1286I	GDGCHC	3 cut(s)	177, 1037, 1152
Bsp143I	GATC	4 cut(s)	24, 639, 706, 981
Bsp19I	CCATGG	1 cut(s)	986
BspACI	CCGC	5 cut(s)	392, 395, 407, 758, 798
BspANI	GGCC	4 cut(s)	328, 376, 512, 766
BspCNI	CTCAG	4 cut(s)	93, 810, 876, 1023
BspFNI	CGCG	1 cut(s)	1190
BspLI	GGNNCC	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	1151
BspOI	GCTAGC	1 cut(s)	1049
BspPI	GGATC	2 cut(s)	714, 976
BspTNI	GGTCTC	1 cut(s)	807
BsrI	ACTGG	2 cut(s)	704, 1153
BssECI	CCNNGG	3 cut(s)	323, 986, 1050
BssMI	GATC	4 cut(s)	24, 639, 706, 981
BssT1I	CCWWGG	3 cut(s)	323, 986, 1050
Bst4CI	ACNGT	3 cut(s)	473, 575, 1183
Bst6I	CTCTTC	1 cut(s)	1058
BstC8I	GCNNGC	2 cut(s)	958, 1047
BstDEI	CTNAG	6 cut(s)	101, 546, 818, 884, 1031, 1040
BstDSI	CCRYGG	1 cut(s)	986
BstF5I	GGATG	1 cut(s)	1002
BstFNI	CGCG	1 cut(s)	1190
BstKTI	GATC	4 cut(s)	27, 642, 709, 984
BstMAI	GTCTC	4 cut(s)	125, 807, 1118, 1172
BstMBI	GATC	4 cut(s)	24, 639, 706, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 709, 757
BstSCI	CCNGG	2 cut(s)	450, 1143
BstSFI	CTRYAG	2 cut(s)	519, 808
BstSLI	GKGCMC	1 cut(s)	1152
BstUI	CGCG	1 cut(s)	1190
BstV1I	GCAGC	4 cut(s)	290, 724, 774, 942
BstX2I	RGATCY	1 cut(s)	981
BstXI	CCANNNNNNTGG	1 cut(s)	993
BstYI	RGATCY	1 cut(s)	981
Bsu36I	CCTNAGG	1 cut(s)	818
BsuRI	GGCC	4 cut(s)	328, 376, 512, 766
BtgI	CCRYGG	1 cut(s)	986
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	1002
BtsI	GCAGTG	2 cut(s)	747, 767
BtsIMutI	CAGTG	3 cut(s)	649, 747, 767
BveI	ACCTGC	1 cut(s)	1151
Cac8I	GCNNGC	2 cut(s)	958, 1047
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	7 cut(s)	95, 499, 530, 553, 859, 987, 1060
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	6 cut(s)	101, 546, 818, 884, 1031, 1040
DpnI	GATC	4 cut(s)	26, 641, 708, 983
DpnII	GATC	4 cut(s)	24, 639, 706, 981
EaeI	YGGCCR	1 cut(s)	764
Eam1104I	CTCTTC	1 cut(s)	1058
EarI	CTCTTC	1 cut(s)	1058
EciI	GGCGGA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	1035
Eco130I	CCWWGG	3 cut(s)	323, 986, 1050
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	1037
Eco31I	GGTCTC	1 cut(s)	807
Eco53kI	GAGCTC	1 cut(s)	1035
Eco57I	CTGAAG	1 cut(s)	767
Eco81I	CCTNAGG	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	1035
EcoT14I	CCWWGG	3 cut(s)	323, 986, 1050
EcoT38I	GRGCYC	1 cut(s)	1037
ErhI	CCWWGG	3 cut(s)	323, 986, 1050
Esp3I	CGTCTC	2 cut(s)	125, 1172
FaeI	CATG	7 cut(s)	98, 502, 533, 556, 862, 990, 1063
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	7 cut(s)	94, 498, 529, 552, 858, 986, 1059
FauI	CCCGC	1 cut(s)	765
FbaI	TGATCA	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	6 cut(s)	279, 395, 713, 788, 798, 931
FokI	GGATG	1 cut(s)	1009
FriOI	GRGCYC	1 cut(s)	1037
Fsp4HI	GCNGC	6 cut(s)	279, 395, 713, 788, 798, 931
FspBI	CTAG	2 cut(s)	62, 1046
GluI	GCNGC	6 cut(s)	279, 395, 713, 788, 798, 931
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	4 cut(s)	328, 376, 512, 766
HapII	CCGG	3 cut(s)	452, 767, 1144
Hin1II	CATG	7 cut(s)	98, 502, 533, 556, 862, 990, 1063
HinfI	GANTC	8 cut(s)	208, 229, 251, 653, 823, 1085, 1128, 1172
HpaII	CCGG	3 cut(s)	452, 767, 1144
Hpy166II	GTNNAC	6 cut(s)	241, 476, 631, 697, 1150, 1226
Hpy188I	TCNGA	9 cut(s)	22, 234, 256, 604, 828, 885, 981, 1023, 1177
Hpy188III	TCNNGA	4 cut(s)	40, 62, 178, 432
Hpy8I	GTNNAC	6 cut(s)	241, 476, 631, 697, 1150, 1226
Hpy99I	CGWCG	2 cut(s)	32, 447
HpyAV	CCTTC	1 cut(s)	856
HpyCH4III	ACNGT	3 cut(s)	473, 575, 1183
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	8 cut(s)	302, 494, 521, 539, 659, 677, 1150, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 709, 757
HpyF3I	CTNAG	6 cut(s)	101, 546, 818, 884, 1031, 1040
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	7 cut(s)	98, 502, 533, 556, 862, 990, 1063
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	24, 639, 706, 981
LmnI	GCTCC	3 cut(s)	23, 202, 865
Lsp1109I	GCAGC	4 cut(s)	290, 724, 774, 942
LweI	GCATC	2 cut(s)	481, 987
MaeI	CTAG	2 cut(s)	62, 1046
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	4 cut(s)	26, 641, 708, 983
MboI	GATC	4 cut(s)	24, 639, 706, 981
MboII	GAAGA	8 cut(s)	20, 23, 193, 711, 900, 1075, 1118, 1219
MflI	RGATCY	1 cut(s)	981
MhlI	GDGCHC	3 cut(s)	177, 1037, 1152
MluCI	AATT	2 cut(s)	459, 662
MlyI	GAGTC	5 cut(s)	202, 260, 662, 1094, 1137
MmeI	TCCRAC	3 cut(s)	60, 582, 894
MroXI	GAANNNNTTC	1 cut(s)	752
MslI	CAYNNNNRTG	2 cut(s)	156, 991
MspI	CCGG	3 cut(s)	452, 767, 1144
MspR9I	CCNGG	2 cut(s)	452, 1145
MvnI	CGCG	1 cut(s)	1190
MwoI	GCNNNNNNNGC	3 cut(s)	518, 709, 757
NciI	CCSGG	2 cut(s)	452, 1145
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	4 cut(s)	24, 639, 706, 981
NheI	GCTAGC	1 cut(s)	1045
NlaIII	CATG	7 cut(s)	98, 502, 533, 556, 862, 990, 1063
NlaIV	GGNNCC	1 cut(s)	867
PaqCI	CACCTGC	1 cut(s)	1151
PceI	AGGCCT	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	1187
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	3 cut(s)	229, 823, 1172
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	6 cut(s)	280, 396, 714, 789, 799, 932
PleI	GAGTC	5 cut(s)	202, 259, 661, 1093, 1136
PpsI	GAGTC	5 cut(s)	202, 259, 661, 1093, 1136
Psp124BI	GAGCTC	1 cut(s)	1037
PspFI	CCCAGC	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	156, 991
SacI	GAGCTC	1 cut(s)	1037
SatI	GCNGC	6 cut(s)	279, 395, 713, 788, 798, 931
Sau3AI	GATC	4 cut(s)	24, 639, 706, 981
Sau96I	GGNCC	1 cut(s)	374
SbfI	CCTGCAGG	1 cut(s)	523
SchI	GAGTC	5 cut(s)	202, 260, 662, 1094, 1137
ScrFI	CCNGG	2 cut(s)	452, 1145
SdaI	CCTGCAGG	1 cut(s)	523
SduI	GDGCHC	3 cut(s)	177, 1037, 1152
SfaNI	GCATC	2 cut(s)	481, 987
SfcI	CTRYAG	2 cut(s)	519, 808
SmiMI	CAYNNNNRTG	2 cut(s)	156, 991
Sse8387I	CCTGCAGG	1 cut(s)	523
Sse9I	AATT	2 cut(s)	459, 662
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	5 cut(s)	392, 395, 407, 758, 798
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	2 cut(s)	62, 1046
SstI	GAGCTC	1 cut(s)	1037
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	2 cut(s)	450, 1143
StyI	CCWWGG	3 cut(s)	323, 986, 1050
TaaI	ACNGT	3 cut(s)	473, 575, 1183
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	5 cut(s)	51, 567, 609, 651, 729
TasI	AATT	2 cut(s)	459, 662
TauI	GCSGC	2 cut(s)	397, 800
TfiI	GAWTC	3 cut(s)	229, 823, 1172
TscAI	CASTG	3 cut(s)	649, 747, 767
TseI	GCWGC	4 cut(s)	278, 712, 787, 930
TspDTI	ATGAA	5 cut(s)	518, 567, 875, 1040, 1076
TspGWI	ACGGA	1 cut(s)	1121
TspRI	CASTG	3 cut(s)	649, 747, 767
VneI	GTGCAC	1 cut(s)	1148
XapI	RAATTY	1 cut(s)	662
XbaI	TCTAGA	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1160
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	2 cut(s)	62, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.