Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

76144505 .. 76146595

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCCACAAGAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAAGAACTGGAAGCTTCTCTCGAAAAGAATGCTTCACTGGAGAAAGAAAACCACGAGCTGAGACGAGAAGTTTCTCGCCTCAGAGATCAGATAACTTCCCTTAAAGCACACAACCATGAGAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCTGCAAAAGAGAAAATGAGTCCGAAATTAGACTTCACAGAGGAAAAGCCGGCAACGACATTGACAAATGCACCACCGCCCAAACCACCTCCAACTCCTCCTGCTTCATTCAAGGAGGTAAAGGGAAATAAAGGACCGTCAGCACCAGCACCTCCACCTCCACCACCGCCCTCAAAATCACTAGTCGGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTCTACCGATCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCGGTGAGGTGGAGTCAGCAACCTTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTTGATGAAAGAGCAGTCTTGAAGCATTTTCCGCAGTGGCCAGAACGAAAAGCCGACACTCTGCGAGAAGCAGCTTGCAACTACAGAGACCTCAGAAACCTCAAATCCGAAGTCTCATCATTCGAAGACAGCATGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATAGAAGCATTACAAGATAGGCAAGCATGCATGTTTATGTCCAAAAGCTTAAATTTTACTGTTCCATTCATTGTAGGGAACGAAATATTAAGGTTCAATTTTGACAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACCAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGTCTGATCGGACAGTTGAAAGTAAGTTCTCTAAGGCTGGCCAAAGAGTTCATGAAAAGGATTATCAAAGAAGTGCAGTCTAGTGAATGCTCAAGAGTAGAAAACCTCTTGCTCCAAGGAGTCCGATTTGCTTTCCGAGTACACCAGTTTGCAGGCGGATTTGATTCAGAGACTATACTCTCCTTCGAGGAGCTAAAGAAGATAGGCACGGATATTAAGAGACAAACCAACAAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

441

Amino Acids

50.42

Weight (kDa)

8.97

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	305, 395, 746, 1239
AclWI	GGATC	3 cut(s)	473, 702, 1051
AcoI	YGGCCR	2 cut(s)	752, 1122
AcsI	RAATTY	2 cut(s)	619, 931
AfaI	GTAC	1 cut(s)	1224
AgsI	TTSAA	5 cut(s)	340, 420, 736, 976, 1102
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	9 cut(s)	62, 106, 230, 454, 581, 703, 788, 927, 1276
AluI	AGCT	9 cut(s)	62, 106, 230, 454, 581, 703, 788, 927, 1276
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	5 cut(s)	103, 795, 832, 1247, 1297
AlwI	GGATC	3 cut(s)	473, 702, 1051
AoxI	GGCC	2 cut(s)	752, 1122
ApeKI	GCWGC	4 cut(s)	230, 700, 785, 1005
ApoI	RAATTY	2 cut(s)	619, 931
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	28, 523, 644
AsuII	TTCGAA	1 cut(s)	837
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	2 cut(s)	754, 1124
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	217, 712, 797, 1017
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	5 cut(s)	103, 795, 832, 1247, 1297
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	2 cut(s)	410, 1164
BfmI	CTRYAG	2 cut(s)	507, 796
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	231, 701, 786, 1006
BlsI	GCNGC	4 cut(s)	232, 702, 787, 1007
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	855
BoxI	GACNNNNGTC	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	1159
BsaBI	GATNNNNATC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	711, 1061, 1198
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	60, 90, 1228
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	711, 1061, 1198
BseGI	GGATG	1 cut(s)	1077
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	5 cut(s)	36, 58, 98, 142, 820
BseNI	ACTGG	3 cut(s)	60, 90, 1228
BseRI	GAGGAG	2 cut(s)	315, 1286
BseXI	GCAGC	4 cut(s)	217, 712, 797, 1017
BsgI	GTGCAG	1 cut(s)	1178
BshFI	GGCC	2 cut(s)	754, 1124
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	1037
BsmAI	GTCTC	5 cut(s)	103, 795, 832, 1247, 1297
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	1037
BsmI	GAATGC	2 cut(s)	82, 1175
BsnI	GGCC	2 cut(s)	754, 1124
Bso31I	GGTCTC	1 cut(s)	795
Bsp119I	TTCGAA	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	1061
BspACI	CCGC	4 cut(s)	305, 395, 746, 1239
BspANI	GGCC	2 cut(s)	754, 1124
BspCNI	CTCAG	5 cut(s)	35, 57, 99, 141, 819
BspHI	TCATGA	2 cut(s)	30, 1134
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	3 cut(s)	473, 702, 1051
BspT104I	TTCGAA	1 cut(s)	837
BspTNI	GGTCTC	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	60, 90, 1228
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	711, 1061, 1198
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	3 cut(s)	711, 1061, 1198
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	5 cut(s)	178, 366, 940, 1098, 1320
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	6 cut(s)	279, 790, 903, 907, 1122, 1237
BstDEI	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 1001, 1115
BstDSI	CCRYGG	1 cut(s)	1061
BstF5I	GGATG	1 cut(s)	1077
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	5 cut(s)	103, 795, 832, 1247, 1297
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
BstNSI	RCATGY	2 cut(s)	909, 913
BstPAI	GACNNNNGTC	1 cut(s)	1083
BstSFI	CTRYAG	2 cut(s)	507, 796
BstV1I	GCAGC	4 cut(s)	217, 712, 797, 1017
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	478, 1056
BstXI	CCANNNNNNTGG	1 cut(s)	1068
BstYI	RGATCY	2 cut(s)	478, 1056
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	754, 1124
BtgI	CCRYGG	1 cut(s)	1061
BtsCI	GGATG	1 cut(s)	1077
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	83, 755
Cac8I	GCNNGC	6 cut(s)	279, 790, 903, 907, 1122, 1237
CciI	TCATGA	2 cut(s)	30, 1134
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	1223
CviQI	GTAC	1 cut(s)	1223
DdeI	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 1001, 1115
EaeI	YGGCCR	2 cut(s)	752, 1122
EciI	GGCGGA	1 cut(s)	1254
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	3 cut(s)	711, 1061, 1198
Eco24I	GRGCYC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoT14I	CCWWGG	3 cut(s)	711, 1061, 1198
EcoT22I	ATGCAT	1 cut(s)	911
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	3 cut(s)	711, 1061, 1198
Esp3I	CGTCTC	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	1037
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	231, 701, 786, 1006
FokI	GGATG	1 cut(s)	1084
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	231, 701, 786, 1006
FspBI	CTAG	2 cut(s)	410, 1164
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	231, 701, 786, 1006
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	754, 1124
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	60, 925
HinfI	GANTC	4 cut(s)	247, 641, 1203, 1247
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	3 cut(s)	28, 523, 644
Hpy166II	GTNNAC	1 cut(s)	1225
Hpy188III	TCNNGA	8 cut(s)	31, 68, 184, 196, 625, 733, 1135, 1176
Hpy8I	GTNNAC	1 cut(s)	1225
HpyAV	CCTTC	3 cut(s)	49, 844, 1276
HpyCH4III	ACNGT	5 cut(s)	178, 366, 940, 1098, 1320
HpyCH4V	TGCA	8 cut(s)	233, 299, 509, 527, 792, 909, 1159, 1235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
HpyF3I	CTNAG	8 cut(s)	22, 44, 107, 128, 806, 872, 1001, 1115
HspAI	GCGC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	853, 1200, 1273
Lsp1109I	GCAGC	4 cut(s)	217, 712, 797, 1017
MaeI	CTAG	2 cut(s)	410, 1164
MboII	GAAGA	5 cut(s)	23, 199, 851, 888, 1294
MflI	RGATCY	2 cut(s)	478, 1056
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	2 cut(s)	754, 1124
MluCI	AATT	6 cut(s)	254, 447, 619, 685, 931, 976
MluNI	TGGCCA	2 cut(s)	754, 1124
MlyI	GAGTC	3 cut(s)	256, 650, 1212
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	2 cut(s)	754, 1124
Mph1103I	ATGCAT	1 cut(s)	911
MroNI	GCCGGC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	191
MscI	TGGCCA	2 cut(s)	754, 1124
MseI	TTAA	5 cut(s)	150, 654, 929, 968, 1299
MslI	CAYNNNNRTG	3 cut(s)	162, 914, 1066
Msp20I	TGGCCA	2 cut(s)	754, 1124
MspA1I	CMGCKG	2 cut(s)	230, 703
MspI	CCGG	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	82, 1175
MwoI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
NaeI	GCCGGC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	1061
NgoMIV	GCCGGC	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	855
NsiI	ATGCAT	1 cut(s)	911
NspI	RCATGY	2 cut(s)	909, 913
NspV	TTCGAA	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	909
PagI	TCATGA	2 cut(s)	30, 1134
PctI	GAATGC	2 cut(s)	82, 1175
PdiI	GCCGGC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	1247
PkrI	GCNGC	4 cut(s)	232, 702, 787, 1007
PleI	GAGTC	3 cut(s)	255, 649, 1211
PpsI	GAGTC	3 cut(s)	255, 649, 1211
PshAI	GACNNNNGTC	1 cut(s)	1083
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	478, 1056
PvuII	CAGCTG	2 cut(s)	230, 703
RsaI	GTAC	1 cut(s)	1224
RsaNI	GTAC	1 cut(s)	1223
RseI	CAYNNNNRTG	3 cut(s)	162, 914, 1066
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	150, 654, 929, 968, 1299
SatI	GCNGC	4 cut(s)	231, 701, 786, 1006
Sau96I	GGNCC	1 cut(s)	362
SbfI	CCTGCAGG	1 cut(s)	511
SchI	GAGTC	3 cut(s)	256, 650, 1212
SdaI	CCTGCAGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	456
SfcI	CTRYAG	2 cut(s)	507, 796
SfuI	TTCGAA	1 cut(s)	837
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	3 cut(s)	162, 914, 1066
SmlI	CTYRAG	1 cut(s)	1174
SmoI	CTYRAG	1 cut(s)	1174
SpeI	ACTAGT	1 cut(s)	409
SphI	GCATGC	1 cut(s)	909
Sse8387I	CCTGCAGG	1 cut(s)	511
Sse9I	AATT	6 cut(s)	254, 447, 619, 685, 931, 976
SsiI	CCGC	4 cut(s)	305, 395, 746, 1239
SspI	AATATT	1 cut(s)	966
SspMI	CTAG	2 cut(s)	410, 1164
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	3 cut(s)	711, 1061, 1198
TaaI	ACNGT	5 cut(s)	178, 366, 940, 1098, 1320
TaqI	TCGA	6 cut(s)	69, 203, 555, 597, 837, 1269
TasI	AATT	6 cut(s)	254, 447, 619, 685, 931, 976
TatI	WGTACW	1 cut(s)	1222
TfiI	GAWTC	1 cut(s)	1247
Tru1I	TTAA	5 cut(s)	150, 654, 929, 968, 1299
Tru9I	TTAA	5 cut(s)	150, 654, 929, 968, 1299
TscAI	CASTG	2 cut(s)	90, 755
TseI	GCWGC	4 cut(s)	230, 700, 785, 1005
TspGWI	ACGGA	1 cut(s)	1307
TspRI	CASTG	2 cut(s)	90, 755
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	619, 931
XceI	RCATGY	2 cut(s)	909, 913
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	410, 1164
Zsp2I	ATGCAT	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.