Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010473

Physical Location & Seq

Genomic Coordinates Forward (+)

78908249 .. 78911939

Gene Structure 3691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG461000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCACAAGAAGATGAAAACTCAGAGATCATGATCACCTTCCTCAGAAAAGAACTCGAAGCTTCTCTCGAAAAGAATGCTTCACTGGAGAAAGAAAACCACGAGCTGAGACGAGAAGTTTCTCGCCTCAGAGATCAGATAACTTCCCTTAAAGCACACAACCATGAGAGGAAAACTGTTCTCTGGAAGAAGTTCCAGAACTCGATGGATACACCAGAGCAAAGTCCAGCTGCAAAAGAGAAAATGAGTCCGAAATTAGACTTCACAGAGGAAAAGCCGGCAACGACATTGACAAATGCACCACCGCCCAAACCACCTCCAACTCCTCCTGCTTCATTCAAGGAGGTAAAGGGAAATAAAGGGCCGTCAGCACCAGCACCTCCACCTCCACCACCGCCCTCAAAATCACTAGTCAGTTCAAAAGGAGTGCGCCGTGTGCCAGAAGTAATTGAGCTCTACCGATCACTTACAAGGAAAGATCCACACATGGAGAACAAAGCCAACCCTGCAGGAGTTCATGTTTTTGCACTCACCAAGAACATGATTGGAGAAATCGAAAATCGTTCATCTTATGTTTTAGCTATAAAGTCAGAGGTCGAAACACAAGCAGAGTTCATAAATTTCTTGATCGGTGAGGTGGAGTCAGCAACCTTTAAGAACATTGCTGATGTAGAAGCATTTGTGAATTGGCTGGATCGGCAGCTGTCCTCCTTGGTTGATGAAAGAGCAGTCTTGAAGCATTTTCCGCAGTGGCCAGAACGAAAAGCCGACACTCTGCGAGAAGCTGCTTGCAACTACAAAGACCTCAGAAACCTCAAATCCGAAGTCTCATCATTCGAAGACAGCATGAAGGAGCCATTGATCTTGGCTCTAAGAAGAATAGAAGCATTACAAGATAGATTGGAGAGAAGTCTTAGCAGCACAGAGAGGACAAGGGACATTACCAGCAAGAAATACAGGGATTTTCAGATCCCATGGGAATGGATGTTAGACACAGGTCTGATCGGACAGGTAGGTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.89

Weight (kDa)

7.05

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07120 AT1G07120
fragaria_vesca	FvH4_3g39070 FvH4_3g39070 FvH4_3g39070
malus_domestica	MD03G1065000.v1.1 MD11G1069000.v1.1
prunus_persica	Prupe.6G053900_v2.0.a1 Prupe.6G053900_v2.0.a1
pyrus_communis	pycom03g05200 pycom11g05740
rosa_chinensis	RchiOBHm_Chr5g0070381
rosa_laevigata	RLG00000036129
rosa_multiflora	Rmu_sc0007961.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010820
rosa_rugosa	Rorug05G0405500
rosa_samantha	Rh5AG461000 Rh5BG479300 Rh5CG503500 Rh5DG491200
rosa_wichuraiana	Rw5G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	305, 395, 746
AclWI	GGATC	3 cut(s)	473, 702, 964
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	619
AgsI	TTSAA	3 cut(s)	340, 420, 736
AhlI	ACTAGT	1 cut(s)	409
AluBI	AGCT	7 cut(s)	62, 106, 230, 454, 581, 703, 785
AluI	AGCT	7 cut(s)	62, 106, 230, 454, 581, 703, 785
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	103, 832
AlwI	GGATC	3 cut(s)	473, 702, 964
AoxI	GGCC	2 cut(s)	362, 752
ApeKI	GCWGC	4 cut(s)	230, 700, 785, 918
ApoI	RAATTY	1 cut(s)	619
ArsI	GACNNNNNNTTYG	2 cut(s)	810, 842
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	3 cut(s)	28, 523, 644
AsuII	TTCGAA	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	456
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	217, 712, 772, 930
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	2 cut(s)	349, 417
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciVI	GTATCC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	103, 832
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	4 cut(s)	231, 701, 786, 919
BlsI	GCNGC	4 cut(s)	232, 702, 787, 920
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	855
BoxI	GACNNNNGTC	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	837
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	711, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	711, 974
BseGI	GGATG	1 cut(s)	990
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	5 cut(s)	36, 58, 98, 142, 820
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	4 cut(s)	217, 712, 772, 930
BshFI	GGCC	2 cut(s)	364, 754
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	950
BsmAI	GTCTC	2 cut(s)	103, 832
BsmBI	CGTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	364, 754
Bsp119I	TTCGAA	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	3 cut(s)	305, 395, 746
BspANI	GGCC	2 cut(s)	364, 754
BspCNI	CTCAG	5 cut(s)	35, 57, 99, 141, 819
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	3 cut(s)	473, 702, 964
BspT104I	TTCGAA	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	711, 974
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	711, 974
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	2 cut(s)	279, 790
BstDEI	CTNAG	7 cut(s)	22, 44, 107, 128, 806, 872, 914
BstDSI	CCRYGG	1 cut(s)	974
BstF5I	GGATG	1 cut(s)	990
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	103, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
BstPAI	GACNNNNGTC	1 cut(s)	996
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	4 cut(s)	217, 712, 772, 930
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	478, 969
BstXI	CCANNNNNNTGG	1 cut(s)	981
BstYI	RGATCY	2 cut(s)	478, 969
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	364, 754
BtgI	CCRYGG	1 cut(s)	974
BtsCI	GGATG	1 cut(s)	990
BtsI	GCAGTG	1 cut(s)	755
BtsIMutI	CAGTG	2 cut(s)	83, 755
Cac8I	GCNNGC	2 cut(s)	279, 790
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	362
CviAII	CATG	7 cut(s)	31, 164, 487, 518, 541, 847, 975
DdeI	CTNAG	7 cut(s)	22, 44, 107, 128, 806, 872, 914
EaeI	YGGCCR	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	2 cut(s)	711, 974
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	711, 974
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	2 cut(s)	711, 974
Esp3I	CGTCTC	1 cut(s)	103
FaeI	CATG	7 cut(s)	34, 167, 490, 521, 544, 850, 978
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	7 cut(s)	30, 163, 486, 517, 540, 846, 974
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	231, 701, 786, 919
FokI	GGATG	1 cut(s)	997
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	231, 701, 786, 919
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	231, 701, 786, 919
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	364, 754
HapII	CCGG	1 cut(s)	278
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	7 cut(s)	34, 167, 490, 521, 544, 850, 978
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	247, 641
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	3 cut(s)	28, 523, 644
Hpy188III	TCNNGA	6 cut(s)	31, 68, 184, 196, 625, 733
HpyAV	CCTTC	2 cut(s)	49, 844
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	233, 299, 509, 527, 792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
HpyF3I	CTNAG	7 cut(s)	22, 44, 107, 128, 806, 872, 914
Hsp92II	CATG	7 cut(s)	34, 167, 490, 521, 544, 850, 978
HspAI	GCGC	1 cut(s)	430
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	4 cut(s)	217, 712, 772, 930
MaeI	CTAG	1 cut(s)	410
MboII	GAAGA	4 cut(s)	23, 199, 851, 888
MflI	RGATCY	2 cut(s)	478, 969
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	4 cut(s)	254, 447, 619, 685
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	2 cut(s)	256, 650
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	754
MroNI	GCCGGC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	2 cut(s)	150, 654
MslI	CAYNNNNRTG	2 cut(s)	162, 979
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	2 cut(s)	230, 703
MspI	CCGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	4 cut(s)	436, 506, 697, 745
NaeI	GCCGGC	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	974
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	7 cut(s)	34, 167, 490, 521, 544, 850, 978
NlaIV	GGNNCC	1 cut(s)	855
NspV	TTCGAA	1 cut(s)	837
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	82
PdiI	GCCGGC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	232, 702, 787, 920
PleI	GAGTC	2 cut(s)	255, 649
PpsI	GAGTC	2 cut(s)	255, 649
PshAI	GACNNNNGTC	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	478, 969
PvuII	CAGCTG	2 cut(s)	230, 703
RseI	CAYNNNNRTG	2 cut(s)	162, 979
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	150, 654
SatI	GCNGC	4 cut(s)	231, 701, 786, 919
Sau96I	GGNCC	1 cut(s)	362
SbfI	CCTGCAGG	1 cut(s)	511
SchI	GAGTC	2 cut(s)	256, 650
SdaI	CCTGCAGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	507
SfuI	TTCGAA	1 cut(s)	837
SmiMI	CAYNNNNRTG	2 cut(s)	162, 979
SpeI	ACTAGT	1 cut(s)	409
Sse8387I	CCTGCAGG	1 cut(s)	511
Sse9I	AATT	4 cut(s)	254, 447, 619, 685
SsiI	CCGC	3 cut(s)	305, 395, 746
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	2 cut(s)	711, 974
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	6 cut(s)	57, 69, 203, 555, 597, 837
TasI	AATT	4 cut(s)	254, 447, 619, 685
Tru1I	TTAA	2 cut(s)	150, 654
Tru9I	TTAA	2 cut(s)	150, 654
TscAI	CASTG	2 cut(s)	90, 755
TseI	GCWGC	4 cut(s)	230, 700, 785, 918
TspDTI	ATGAA	7 cut(s)	30, 324, 506, 555, 604, 735, 863
TspRI	CASTG	2 cut(s)	90, 755
XapI	RAATTY	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.