Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Forward (+)

2379595 .. 2381390

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTCAAGTCTTCTTAATATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACTGTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCCGAGTCTTCTATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCAAAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCTGTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCGAAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAATACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTTATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTATCAAGGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACATCCTCGGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

204

Amino Acids

23.01

Weight (kDa)

5.29

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	105 - 196	3.2e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	581
AcuI	CTGAAG	2 cut(s)	158, 495
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	94, 499
AflII	CTTAAG	2 cut(s)	196, 437
AgsI	TTSAA	3 cut(s)	83, 271, 302
AhlI	ACTAGT	1 cut(s)	56
AluBI	AGCT	4 cut(s)	33, 195, 422, 584
AluI	AGCT	4 cut(s)	33, 195, 422, 584
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	581
ApeKI	GCWGC	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	2, 135
BbvI	GCAGC	1 cut(s)	593
BccI	CCATC	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	555
BcuI	ACTAGT	1 cut(s)	56
BfaI	CTAG	3 cut(s)	57, 212, 558
BfmI	CTRYAG	1 cut(s)	28
BfrI	CTTAAG	2 cut(s)	196, 437
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	582
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	583
BmiI	GGNNCC	2 cut(s)	491, 507
BpiI	GAAGAC	2 cut(s)	2, 135
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 499
Bse8I	GATNNNNATC	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	599
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	94, 499
BseMII	CTCAG	2 cut(s)	60, 255
BseXI	GCAGC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	94, 499
BsmAI	GTCTC	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	238, 573
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	59, 256
BspLI	GGNNCC	2 cut(s)	491, 507
BspPI	GGATC	1 cut(s)	581
BspTI	CTTAAG	2 cut(s)	196, 437
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	2 cut(s)	238, 573
Bst4CI	ACNGT	3 cut(s)	29, 79, 396
Bst6I	CTCTTC	1 cut(s)	518
BstAFI	CTTAAG	2 cut(s)	196, 437
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	4 cut(s)	46, 264, 290, 541
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	599
BstKTI	GATC	2 cut(s)	241, 576
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	2 cut(s)	238, 573
BstNSI	RCATGY	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	593
BstV2I	GAAGAC	2 cut(s)	2, 135
BsuI	GTATCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	599
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	25, 75, 261, 348
Cac8I	GCNNGC	1 cut(s)	401
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	38, 354
CviJI	RGCY	7 cut(s)	33, 137, 195, 384, 422, 490, 584
CviKI_1	RGCY	7 cut(s)	33, 137, 195, 384, 422, 490, 584
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	46, 264, 290, 541
DpnI	GATC	2 cut(s)	240, 575
DpnII	GATC	2 cut(s)	238, 573
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	158, 495
Eco91I	GGTNACC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	410
FaeI	CATG	2 cut(s)	41, 357
FatI	CATG	2 cut(s)	37, 353
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	3 cut(s)	57, 212, 558
GluI	GCNGC	1 cut(s)	582
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	2 cut(s)	41, 357
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	5 cut(s)	51, 114, 140, 545, 608
HphI	GGTGA	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	226, 475, 607
Hpy188III	TCNNGA	5 cut(s)	48, 203, 271, 299, 612
Hpy99I	CGWCG	1 cut(s)	581
HpyCH4III	ACNGT	3 cut(s)	29, 79, 396
HpyCH4V	TGCA	3 cut(s)	353, 399, 554
HpyF3I	CTNAG	4 cut(s)	46, 264, 290, 541
Hsp92II	CATG	2 cut(s)	41, 357
Kzo9I	GATC	2 cut(s)	238, 573
LmnI	GCTCC	2 cut(s)	427, 495
LpnPI	CCDG	8 cut(s)	33, 85, 103, 188, 261, 365, 393, 438
Lsp1109I	GCAGC	1 cut(s)	593
MaeI	CTAG	3 cut(s)	57, 212, 558
MaeIII	GTNAC	2 cut(s)	259, 410
MalI	GATC	2 cut(s)	240, 575
MboI	GATC	2 cut(s)	238, 573
MboII	GAAGA	3 cut(s)	135, 424, 505
MluCI	AATT	2 cut(s)	284, 319
MlyI	GAGTC	3 cut(s)	45, 123, 149
MnlI	CCTC	4 cut(s)	59, 519, 564, 613
MseI	TTAA	3 cut(s)	15, 197, 438
MslI	CAYNNNNRTG	1 cut(s)	158
MspCI	CTTAAG	2 cut(s)	196, 437
NdeII	GATC	2 cut(s)	238, 573
NlaIII	CATG	2 cut(s)	41, 357
NlaIV	GGNNCC	2 cut(s)	491, 507
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	259, 410
NspI	RCATGY	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	545, 608
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	3 cut(s)	45, 122, 148
PpsI	GAGTC	3 cut(s)	45, 122, 148
PspEI	GGTNACC	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	491, 507
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	15, 197, 438
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	2 cut(s)	238, 573
SchI	GAGTC	3 cut(s)	45, 123, 149
SetI	ASST	6 cut(s)	35, 122, 197, 213, 424, 586
SfcI	CTRYAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	196, 437
SmoI	CTYRAG	2 cut(s)	196, 437
SpeI	ACTAGT	1 cut(s)	56
Sse9I	AATT	2 cut(s)	284, 319
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	3 cut(s)	57, 212, 558
TaaI	ACNGT	3 cut(s)	29, 79, 396
TaqI	TCGA	2 cut(s)	308, 576
TasI	AATT	2 cut(s)	284, 319
TfiI	GAWTC	2 cut(s)	545, 608
Tru1I	TTAA	3 cut(s)	15, 197, 438
Tru9I	TTAA	3 cut(s)	15, 197, 438
TscAI	CASTG	4 cut(s)	32, 82, 268, 355
TseFI	GTSAC	2 cut(s)	259, 410
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	2 cut(s)	259, 410
TspDTI	ATGAA	4 cut(s)	243, 297, 471, 480
TspGWI	ACGGA	3 cut(s)	126, 482, 546
TspRI	CASTG	4 cut(s)	32, 82, 268, 355
Vha464I	CTTAAG	2 cut(s)	196, 437
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	3 cut(s)	57, 212, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.