Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

5679862 .. 5681609

Gene Structure 1748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1082700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGTAGAATAATTCAGAATTCAGATATGGCAATTGAGAGCATATCAACCGCCAAGAACTTATCTCCCCCAAAACCCCACTCTTCAATTTTACCGTTTGTTCTAATGCAAAGGCAGACCATTCTATACGGCAGCAAGGCCACAGCCTCTTTCAACTTTGCCACAAATCCAAACACAAAACATGGTTCAACAAGTCCCTTCCAAGTTAAATTTTGTCTCGTGAAAGCAAATTTTCCATCAAACATCATAAAAGGATTGGAAGCTTCGGGATACCGCCACGCATTCGGTCACGTAGAGGTCCGAGTGGCGTCTGGAAACCTAGGAGAATTGGCCGAGGAAGACGACGACGATGTGTGTCCCGTTGAATGTGTTAGAGAGTTTAGTACCGACGCGGAGTTCAGCAAAATTCTGGAAACGGCCAAAGAAACTGGTGCTTTGGTTGTCGTAGATTTTTATCGGATTTCGTGTGGGAGCTGCAAGTACATAGAGCAAGGGTTTTCGAAGCTGTGTAAGGGAGCTGGTGATGGAGAAGCTGCTGTTATCTTCTTGAAGCATAATGTAATTGATGAGTACGACGAACAATCCGAGGTTGCTGATCGACTTAGAATTAAGACGGTGCCGCTCTTCCACTTCTATAAAGACGGGATCCTCTTGGAAGCATTTCCAACTAGAGACAAAGAGAGGATCACTGCAGCCATTAGTAAATACACGAGTCCAGCATCTCAAGATACTCGAGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

248

Amino Acids

27.19

Weight (kDa)

5.9

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	128 - 233	4.2e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccBSI	CCGCTC	1 cut(s)	622
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	51, 274, 392, 620
AclWI	GGATC	3 cut(s)	640, 653, 692
AcoI	YGGCCR	2 cut(s)	330, 417
AcsI	RAATTY	4 cut(s)	19, 209, 229, 405
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	3 cut(s)	385, 482, 572
AgsI	TTSAA	5 cut(s)	87, 154, 189, 365, 550
AluBI	AGCT	6 cut(s)	263, 474, 505, 518, 533, 737
AluI	AGCT	6 cut(s)	263, 474, 505, 518, 533, 737
Alw26I	GTCTC	2 cut(s)	221, 666
AlwI	GGATC	3 cut(s)	640, 653, 692
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	3 cut(s)	138, 330, 417
ApeKI	GCWGC	4 cut(s)	132, 474, 533, 692
ApoI	RAATTY	4 cut(s)	19, 209, 229, 405
Asp700I	GAANNNNTTC	1 cut(s)	660
AspA2I	CCTAGG	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	1 cut(s)	732
AvaII	GGWCC	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	616
BauI	CACGAG	2 cut(s)	218, 709
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	144, 461, 520, 704
BccI	CCATC	2 cut(s)	244, 518
BceAI	ACGGC	2 cut(s)	145, 432
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	221, 666
BfaI	CTAG	3 cut(s)	320, 669, 738
BfmI	CTRYAG	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	133, 475, 534, 620, 693
BlnI	CCTAGG	1 cut(s)	319
BlsI	GCNGC	5 cut(s)	134, 476, 535, 621, 694
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	618, 647
BmsI	GCATC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	319, 333, 585
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	319, 333, 585
BseJI	GATNNNNATC	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	4 cut(s)	144, 461, 520, 704
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	140, 332, 419
BshNI	GGYRCC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	732
BslFI	GGGAC	2 cut(s)	180, 342
BsmAI	GTCTC	2 cut(s)	221, 666
BsmFI	GGGAC	2 cut(s)	180, 342
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	140, 332, 419
BsoBI	CYCGRG	1 cut(s)	732
Bsp119I	TTCGAA	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	595, 645, 684
BspACI	CCGC	4 cut(s)	51, 274, 392, 620
BspANI	GGCC	3 cut(s)	140, 332, 419
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	2 cut(s)	618, 647
BspMAI	CTGCAG	1 cut(s)	694
BspPI	GGATC	3 cut(s)	640, 653, 692
BspQI	GCTCTTC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	616
BsrBI	CCGCTC	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	319, 333, 585
BssMI	GATC	3 cut(s)	595, 645, 684
BssNI	GRCGYC	1 cut(s)	308
BssSI	CACGAG	2 cut(s)	218, 709
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	2 cut(s)	218, 709
Bst4CI	ACNGT	2 cut(s)	96, 616
Bst6I	CTCTTC	2 cut(s)	88, 629
BstACI	GRCGYC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	602
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	3 cut(s)	598, 648, 687
BstMAI	GTCTC	2 cut(s)	221, 666
BstMBI	GATC	3 cut(s)	595, 645, 684
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	4 cut(s)	144, 461, 520, 704
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	140, 332, 419
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	2 cut(s)	297, 398
Csp6I	GTAC	3 cut(s)	384, 481, 571
CviAII	CATG	1 cut(s)	182
CviQI	GTAC	3 cut(s)	384, 481, 571
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	3 cut(s)	597, 647, 686
DpnII	GATC	3 cut(s)	595, 645, 684
EaeI	YGGCCR	2 cut(s)	330, 417
Eam1104I	CTCTTC	2 cut(s)	88, 629
EarI	CTCTTC	2 cut(s)	88, 629
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	185
FaiI	YATR	8 cut(s)	29, 44, 127, 183, 248, 485, 555, 636
FaqI	GGGAC	2 cut(s)	180, 342
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	133, 475, 534, 620, 693
Fsp4HI	GCNGC	5 cut(s)	133, 475, 534, 620, 693
FspBI	CTAG	3 cut(s)	320, 669, 738
GluI	GCNGC	5 cut(s)	133, 475, 534, 620, 693
HaeIII	GGCC	3 cut(s)	140, 332, 419
HgaI	GACGC	2 cut(s)	297, 398
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	1 cut(s)	712
HphI	GGTGA	1 cut(s)	533
Hpy188I	TCNGA	5 cut(s)	18, 25, 302, 459, 586
Hpy188III	TCNNGA	6 cut(s)	220, 267, 312, 410, 547, 725
Hpy99I	CGWCG	4 cut(s)	347, 350, 392, 578
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	96, 616
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	109, 477, 692
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	3 cut(s)	595, 645, 684
LguI	GCTCTTC	1 cut(s)	629
LmnI	GCTCC	2 cut(s)	471, 515
LpnPI	CCDG	5 cut(s)	297, 395, 414, 504, 729
Lsp1109I	GCAGC	4 cut(s)	144, 461, 520, 704
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	3 cut(s)	320, 669, 738
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	597, 647, 686
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	3 cut(s)	595, 645, 684
MboII	GAAGA	4 cut(s)	75, 350, 535, 616
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	6 cut(s)	157, 289, 328, 580, 659, 675
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	3 cut(s)	207, 609, 742
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	281
MvnI	CGCG	1 cut(s)	392
NdeII	GATC	3 cut(s)	595, 645, 684
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	2 cut(s)	618, 647
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	660
PkrI	GCNGC	5 cut(s)	134, 476, 535, 621, 694
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
Ppu21I	YACGTR	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	618, 647
PspPI	GGNCC	1 cut(s)	298
PspXI	VCTCGAGB	1 cut(s)	732
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	3 cut(s)	385, 482, 572
RsaNI	GTAC	3 cut(s)	384, 481, 571
SapI	GCTCTTC	1 cut(s)	629
SaqAI	TTAA	3 cut(s)	207, 609, 742
SatI	GCNGC	5 cut(s)	133, 475, 534, 620, 693
Sau3AI	GATC	3 cut(s)	595, 645, 684
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	721
SfaNI	GCATC	1 cut(s)	728
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	732
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	298
SlaI	CTCGAG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	723, 732
SmoI	CTYRAG	2 cut(s)	723, 732
SsiI	CCGC	4 cut(s)	51, 274, 392, 620
SspMI	CTAG	3 cut(s)	320, 669, 738
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	96, 616
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	500, 598, 733
TaqII	GACCGA	1 cut(s)	275
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	622
Tru1I	TTAA	3 cut(s)	207, 609, 742
Tru9I	TTAA	3 cut(s)	207, 609, 742
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	4 cut(s)	132, 474, 533, 692
Tsp45I	GTSAC	1 cut(s)	287
TspRI	CASTG	1 cut(s)	694
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	4 cut(s)	19, 209, 229, 405
XhoI	CTCGAG	1 cut(s)	732
XmaJI	CCTAGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	3 cut(s)	320, 669, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.