Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

53804686 .. 53806184

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTTAGTTTGGTCTCCAACAAGGCCGAGGCCTCATTCAATTTTGGATCAAAACCATTTATAAAAAGTCCATATGAAATTCCTATCTCATTTCCTAAGAGAACACATGTTGGATTATGCCCTAGCATCAGAATTACAGGTTGGGAAGTTTCAAAGTTTAGCTATGGATTTCGTGCTATAAAGAAGATCAGAGTGGCTGATGAAAATCAAGGAGAATTGTCTGATGAAGATGATGACCTGTGTCCAGTTGAATGTGTTAGAGAATTTTATCTGATGAAGAGTTCTTCAAAATTCTTGATACAGCCAAAAAAAAAAAAACAATTCTTTAGTTGGTATTTGCTGCAGGTAATTGATGAGTATGATGAACAATCCGAGGTTGCAGACTGGTTTAAAATTAAGACGGTCCCCCTCTTCCATTTCTATAAAGATGGTGTTCTCTTGGAAGCATTCCCAACTAGAGACGAGGAGAGGATCACTGTGGCAATTCGTAAATACACATCTCCTGCAACATCTGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

174

Amino Acids

20.26

Weight (kDa)

6.75

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	334
AclWI	GGATC	2 cut(s)	55, 479
AcsI	RAATTY	3 cut(s)	78, 263, 290
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	4 cut(s)	40, 153, 251, 288
AjuI	GAANNNNNNNTTGG	2 cut(s)	124, 156
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	19, 453
AlwI	GGATC	2 cut(s)	55, 479
AoxI	GGCC	2 cut(s)	24, 30
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	3 cut(s)	78, 263, 290
AspS9I	GGNCC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	19, 453
BfaI	CTAG	2 cut(s)	123, 456
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	27, 372
Bse1I	ACTGG	2 cut(s)	245, 389
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	27, 372
BseJI	GATNNNNATC	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	245, 389
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	327
BshFI	GGCC	2 cut(s)	26, 32
BslFI	GGGAC	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	19, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	26, 32
Bso31I	GGTCTC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	47, 186, 471
BspANI	GGCC	2 cut(s)	26, 32
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	55, 479
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	245, 389
BssECI	CCNNGG	2 cut(s)	27, 372
BssMI	GATC	3 cut(s)	47, 186, 471
Bst4CI	ACNGT	2 cut(s)	403, 478
Bst6I	CTCTTC	2 cut(s)	272, 416
BstDEI	CTNAG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	50, 189, 474
BstMAI	GTCTC	2 cut(s)	19, 453
BstMBI	GATC	3 cut(s)	47, 186, 471
BstNSI	RCATGY	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	26, 32
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	403
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	5 cut(s)	26, 32, 162, 197, 304
CviKI_1	RGCY	5 cut(s)	26, 32, 162, 197, 304
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	49, 188, 473
DpnII	GATC	3 cut(s)	47, 186, 471
DraI	TTTAAA	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	272, 416
EarI	CTCTTC	2 cut(s)	272, 416
Eco147I	AGGCCT	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	1 cut(s)	110
FaiI	YATR	9 cut(s)	62, 73, 75, 108, 118, 165, 179, 360, 423
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	123, 456
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	26, 32
Hin1II	CATG	1 cut(s)	110
Hpy188I	TCNGA	6 cut(s)	131, 191, 223, 273, 373, 514
Hpy188III	TCNNGA	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	403, 478
HpyCH4V	TGCA	3 cut(s)	343, 380, 506
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	47, 186, 471
LpnPI	CCDG	6 cut(s)	123, 251, 258, 329, 370, 516
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	123, 456
MalI	GATC	3 cut(s)	49, 188, 473
MboI	GATC	3 cut(s)	47, 186, 471
MboII	GAAGA	5 cut(s)	196, 239, 276, 289, 403
MmeI	TCCRAC	2 cut(s)	42, 91
MnlI	CCTC	6 cut(s)	22, 43, 367, 419, 457, 462
MseI	TTAA	2 cut(s)	390, 396
Mva1269I	GAATGC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	3 cut(s)	47, 186, 471
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	52
NspI	RCATGY	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	32
PciI	ACATGT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	446
PkrI	GCNGC	1 cut(s)	342
PscI	ACATGT	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	390, 396
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	47, 186, 471
Sau96I	GGNCC	1 cut(s)	403
SetI	ASST	5 cut(s)	142, 164, 240, 348, 378
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	403
SseBI	AGGCCT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	123, 456
StuI	AGGCCT	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	403, 478
Tru1I	TTAA	2 cut(s)	390, 396
Tru9I	TTAA	2 cut(s)	390, 396
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	5 cut(s)	90, 216, 240, 290, 378
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	3 cut(s)	78, 263, 290
XceI	RCATGY	1 cut(s)	110
XspI	CTAG	2 cut(s)	123, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.