Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Forward (+)

63950347 .. 63952331

Gene Structure 1985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG473400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTATAGACAGACTGTTCTTTATAGCAAGGCCGAGGCCTCATTCAATTTTGGATCAAAACCAATCATAAAAAGTCGATATGAAATTCCCATCTCATTTCCTGAGAGAACACATGTTAGATTATGCCCTAGCATCAGAATTACAGGTTGGGAAGTTTCAATGTTTAGCCATGGATTTCGTGCTATAAAGAAGATCAGAGTGGCTGATGAAAATCAAGGAGAATTGTCTGATGAAGATGATGATCTCTGTCCAGTTGAATGTGTTAGAGAATTTTATACTGATGAGGAGTTCTTCAAAATTCTTGATACGGCCAAAAAAAGCAATTCTTTAGTTGTTGTAGATTTTTATCGTACTTCGTGTGGAAGCTGCAAGTACATAGAGCAAGGGTTTTCAAAGTTATGCAAGAGGGCTGGTGAAGGAGAAGCTGAAGTAATCTTCTTGAAGCACAATGTAATTGATGAGTATGATGAACAATCCGAGGTTGCAGACCGGCTTAGAATTAAGACGGTGCCCCTCTTCCACTTCTATAAAGACGGTGTTCTCTTGGAAGCATTCCCAACCAGGGACAAGGAGAGGATCACTGCGGCAATTCGTAAATACACATCTCCTGAAACATCTGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

209

Amino Acids

24.2

Weight (kDa)

5.71

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	93 - 198	1.6e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	2 cut(s)	61, 584
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	84, 269, 297
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	352, 374
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	6 cut(s)	46, 159, 257, 295, 393, 442
AjnI	CCWGG	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	2 cut(s)	366, 425
AluI	AGCT	2 cut(s)	366, 425
AlwI	GGATC	2 cut(s)	61, 584
AoxI	GGCC	3 cut(s)	30, 36, 309
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	3 cut(s)	84, 269, 297
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	562
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	367, 585
BlsI	GCNGC	2 cut(s)	368, 586
Bme1390I	CCNGG	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	141
BsaBI	GATNNNNATC	3 cut(s)	210, 240, 345
BsaJI	CCNNGG	4 cut(s)	33, 169, 477, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse118I	RCCGGY	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	251
Bse8I	GATNNNNATC	3 cut(s)	210, 240, 345
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	4 cut(s)	33, 169, 477, 561
BseJI	GATNNNNATC	3 cut(s)	210, 240, 345
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	353
BshFI	GGCC	3 cut(s)	32, 38, 311
BshNI	GGYRCC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	32, 38, 311
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	53, 192, 241, 576
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	3 cut(s)	32, 38, 311
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	61, 584
BspT107I	GGYRCC	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	489
BssECI	CCNNGG	4 cut(s)	33, 169, 477, 561
BssMI	GATC	4 cut(s)	53, 192, 241, 576
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	3 cut(s)	16, 508, 536
Bst6I	CTCTTC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	102, 494
BstDSI	CCRYGG	1 cut(s)	169
BstKTI	GATC	4 cut(s)	56, 195, 244, 579
BstMBI	GATC	4 cut(s)	53, 192, 241, 576
BstNI	CCWGG	1 cut(s)	562
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	560
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	32, 38, 311
BtgI	CCRYGG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	351, 373
CviAII	CATG	2 cut(s)	113, 170
CviJI	RGCY	9 cut(s)	32, 38, 168, 203, 311, 366, 410, 425, 493
CviKI_1	RGCY	9 cut(s)	32, 38, 168, 203, 311, 366, 410, 425, 493
CviQI	GTAC	2 cut(s)	351, 373
DdeI	CTNAG	2 cut(s)	102, 494
DpnI	GATC	4 cut(s)	55, 194, 243, 578
DpnII	GATC	4 cut(s)	53, 192, 241, 576
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	2 cut(s)	116, 173
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	112, 169
Fnu4HI	GCNGC	2 cut(s)	367, 585
Fsp4HI	GCNGC	2 cut(s)	367, 585
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	367, 585
HaeIII	GGCC	3 cut(s)	32, 38, 311
HapII	CCGG	1 cut(s)	490
Hin1II	CATG	2 cut(s)	116, 173
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	5 cut(s)	137, 197, 229, 478, 619
Hpy188III	TCNNGA	4 cut(s)	101, 302, 439, 608
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	16, 508, 536
HpyCH4V	TGCA	3 cut(s)	369, 402, 485
HpyF3I	CTNAG	2 cut(s)	102, 494
Hsp92II	CATG	2 cut(s)	116, 173
Kzo9I	GATC	4 cut(s)	53, 192, 241, 576
LpnPI	CCDG	8 cut(s)	114, 129, 264, 396, 503, 547, 574, 621
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	129
MalI	GATC	4 cut(s)	55, 194, 243, 578
MboI	GATC	4 cut(s)	53, 192, 241, 576
MboII	GAAGA	5 cut(s)	202, 245, 283, 427, 508
MhlI	GDGCHC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	28, 49, 277, 399, 472, 524, 567
MseI	TTAA	1 cut(s)	501
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	4 cut(s)	53, 192, 241, 576
NlaIII	CATG	2 cut(s)	116, 173
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	551
PkrI	GCNGC	2 cut(s)	368, 586
PscI	ACATGT	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	510
RsaI	GTAC	2 cut(s)	352, 374
RsaNI	GTAC	2 cut(s)	351, 373
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	367, 585
Sau3AI	GATC	4 cut(s)	53, 192, 241, 576
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	4 cut(s)	148, 368, 427, 483
SfaNI	GCATC	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	16, 508, 536
TaqI	TCGA	1 cut(s)	76
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	4 cut(s)	96, 222, 246, 483
TspRI	CASTG	1 cut(s)	586
XapI	RAATTY	3 cut(s)	84, 269, 297
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.