Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

25585351 .. 25592988

Gene Structure 7638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34430.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCATAGACAGAATGTTCTTCATAGCAAGGCCGAGGCCTCATTTAACTTTGGATCAAAACCGATCTTAAAAAATCCATATGAAATTCCCGTCTCATTTCCTGAGAGAACACATGTTAGATTATGCCCTGGCATCAGACTTACAGGTTGGGAAGTTTCAAAGTTTAGCCATGGCTTTCGTGCTATAAAGAAGATCAGAGTGGCTGATGAAAGTCAAGGAGATTTGTCTGATGAAGATGATGATCTGTGTCCAGTTGAATGTGTTAGAGAATTTTATACTGATGAGGAATTCTTCAAAATTCTTGATGCGGCCAAAGAAAGCCATTCTTTAGTTGTTGTAGATTTTTATCGAACTTCGTGTGGAAGCTGCAAGTACATAGAGCAAGGATTTTCAAAGTTATGCAAGAGAGCTGGTGAAGGAGAAGCTGAAGTAATCTTCTTAAAGCACAATGTAATTGATGAGTATGATGAACAGTCCGAGGTTGCAGACCGACTTAGAATTAAGACGGTGCCCCTCTTCCATTTCTATAAAGACGGTGTTCTCTTGGAAGCATTCCCAACCAGAGACAAGGAGAGGATCACTGCAGCAATTCGTAAATACACATCTCCTGCAACATCTCAATTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

210

Amino Acids

23.97

Weight (kDa)

6.0

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	92 - 198	1.8e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	2 cut(s)	61, 584
AcoI	YGGCCR	1 cut(s)	309
AcsI	RAATTY	4 cut(s)	84, 269, 287, 297
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	159, 257, 295, 393
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	366, 410, 425
AluI	AGCT	3 cut(s)	366, 410, 425
Alw26I	GTCTC	2 cut(s)	97, 558
AlwI	GGATC	2 cut(s)	61, 584
AoxI	GGCC	3 cut(s)	30, 36, 309
ApeKI	GCWGC	2 cut(s)	366, 584
ApoI	RAATTY	4 cut(s)	84, 269, 287, 297
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	353, 596
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	97, 558
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	3 cut(s)	309, 367, 585
BlsI	GCNGC	3 cut(s)	310, 368, 586
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	141, 295
BsaBI	GATNNNNATC	2 cut(s)	240, 345
BsaJI	CCNNGG	4 cut(s)	33, 127, 169, 477
Bse1I	ACTGG	1 cut(s)	251
Bse8I	GATNNNNATC	2 cut(s)	240, 345
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	4 cut(s)	33, 127, 169, 477
BseJI	GATNNNNATC	2 cut(s)	240, 345
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	353, 596
BshFI	GGCC	3 cut(s)	32, 38, 311
BshNI	GGYRCC	1 cut(s)	508
BsmAI	GTCTC	2 cut(s)	97, 558
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	32, 38, 311
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	5 cut(s)	53, 63, 192, 241, 576
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	3 cut(s)	32, 38, 311
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	510
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	61, 584
BspT107I	GGYRCC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	33, 127, 169, 477
BssMI	GATC	5 cut(s)	53, 63, 192, 241, 576
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	474, 508, 536
Bst6I	CTCTTC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	102, 494
BstDSI	CCRYGG	1 cut(s)	169
BstKTI	GATC	5 cut(s)	56, 66, 195, 244, 579
BstMAI	GTCTC	2 cut(s)	97, 558
BstMBI	GATC	5 cut(s)	53, 63, 192, 241, 576
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	353, 596
BsuRI	GGCC	3 cut(s)	32, 38, 311
BtgI	CCRYGG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	113, 170
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	102, 494
DpnI	GATC	5 cut(s)	55, 65, 194, 243, 578
DpnII	GATC	5 cut(s)	53, 63, 192, 241, 576
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	2 cut(s)	116, 173
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FatI	CATG	2 cut(s)	112, 169
FauNDI	CATATG	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	309, 367, 585
Fsp4HI	GCNGC	3 cut(s)	309, 367, 585
GluI	GCNGC	3 cut(s)	309, 367, 585
HaeIII	GGCC	3 cut(s)	32, 38, 311
Hin1II	CATG	2 cut(s)	116, 173
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	4 cut(s)	137, 197, 229, 478
Hpy188III	TCNNGA	2 cut(s)	101, 302
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	474, 508, 536
HpyCH4V	TGCA	6 cut(s)	4, 369, 402, 485, 584, 611
HpyF3I	CTNAG	2 cut(s)	102, 494
Hsp92II	CATG	2 cut(s)	116, 173
Kzo9I	GATC	5 cut(s)	53, 63, 192, 241, 576
LpnPI	CCDG	8 cut(s)	114, 114, 129, 141, 264, 396, 574, 621
Lsp1109I	GCAGC	2 cut(s)	353, 596
LweI	GCATC	2 cut(s)	141, 295
MalI	GATC	5 cut(s)	55, 65, 194, 243, 578
MboI	GATC	5 cut(s)	53, 63, 192, 241, 576
MboII	GAAGA	6 cut(s)	11, 202, 245, 283, 427, 508
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	8 cut(s)	84, 269, 287, 297, 453, 498, 588, 620
MnlI	CCTC	6 cut(s)	28, 49, 277, 472, 524, 567
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	45, 68, 440, 501
MspR9I	CCNGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	169
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	5 cut(s)	53, 63, 192, 241, 576
NlaIII	CATG	2 cut(s)	116, 173
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	112
PctI	GAATGC	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	310, 368, 586
PscI	ACATGT	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	45, 68, 440, 501
SatI	GCNGC	3 cut(s)	309, 367, 585
Sau3AI	GATC	5 cut(s)	53, 63, 192, 241, 576
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	513
SetI	ASST	5 cut(s)	148, 368, 412, 427, 483
SfaNI	GCATC	2 cut(s)	141, 295
SfcI	CTRYAG	1 cut(s)	582
Sse9I	AATT	8 cut(s)	84, 269, 287, 297, 453, 498, 588, 620
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	474, 508, 536
TaqI	TCGA	1 cut(s)	349
TaqII	GACCGA	1 cut(s)	504
TasI	AATT	8 cut(s)	84, 269, 287, 297, 453, 498, 588, 620
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	45, 68, 440, 501
Tru9I	TTAA	4 cut(s)	45, 68, 440, 501
TscAI	CASTG	1 cut(s)	586
TseI	GCWGC	2 cut(s)	366, 584
TspDTI	ATGAA	5 cut(s)	11, 96, 222, 246, 483
TspRI	CASTG	1 cut(s)	586
XapI	RAATTY	4 cut(s)	84, 269, 287, 297
XceI	RCATGY	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.