Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8456761.1

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Forward (+)

1024 .. 1780

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8456761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 425 bp

atgtttagccatggatttcgtgctataaagaagatcagagtggttgatgaaaatcaaggagaattgtctgatgaagatgatgatctctgtccagttgaatgtgttagagaattttatactgatgaggagttcttcaaaattcttgatatggccaaaaaaagcaattctttagttgttgtagatttttatcgtacttcctgtggaagctgcaagtacatagagcaagggttttcaaagttatgcaagagggctggtgaaggagaagctgaagtaatcttcttgaagcacaatgtaattgatgagtatgatgaacaatccgaggttgcagatcggcttagaattaagacggtgcccctcttccacttctataaagacggtgttctcttggaagcattcccaaccagggacaaggagaggatcactgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

142

Amino Acids

16.49

Weight (kDa)

4.96

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	110, 138
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	193, 215
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	98, 136, 234, 283
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	2 cut(s)	207, 266
AluI	AGCT	2 cut(s)	207, 266
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	2 cut(s)	110, 138
AsuHPI	GGTGA	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	403
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	403
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	403
BsaBI	GATNNNNATC	3 cut(s)	51, 81, 186
BsaJI	CCNNGG	3 cut(s)	10, 318, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	92
Bse8I	GATNNNNATC	3 cut(s)	51, 81, 186
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	10, 318, 402
BseJI	GATNNNNATC	3 cut(s)	51, 81, 186
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	33, 82, 328, 417
Bsp19I	CCATGG	1 cut(s)	10
BspANI	GGCC	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	10, 318, 402
BssMI	GATC	4 cut(s)	33, 82, 328, 417
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	349, 377
Bst6I	CTCTTC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	36, 85, 331, 420
BstMBI	GATC	4 cut(s)	33, 82, 328, 417
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
Csp6I	GTAC	2 cut(s)	192, 214
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	6 cut(s)	9, 152, 207, 251, 266, 334
CviKI_1	RGCY	6 cut(s)	9, 152, 207, 251, 266, 334
CviQI	GTAC	2 cut(s)	192, 214
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	4 cut(s)	35, 84, 330, 419
DpnII	GATC	4 cut(s)	33, 82, 328, 417
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	1 cut(s)	14
FaiI	YATR	8 cut(s)	12, 26, 117, 149, 218, 241, 306, 369
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	3 cut(s)	38, 70, 319
Hpy188III	TCNNGA	2 cut(s)	143, 280
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	349, 377
HpyCH4V	TGCA	3 cut(s)	210, 243, 326
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	33, 82, 328, 417
LpnPI	CCDG	5 cut(s)	105, 211, 237, 388, 415
Lsp1109I	GCAGC	1 cut(s)	194
MalI	GATC	4 cut(s)	35, 84, 330, 419
MboI	GATC	4 cut(s)	33, 82, 328, 417
MboII	GAAGA	5 cut(s)	43, 86, 124, 268, 349
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	6 cut(s)	62, 110, 138, 163, 294, 339
MluNI	TGGCCA	1 cut(s)	152
MnlI	CCTC	5 cut(s)	118, 240, 313, 365, 408
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	403
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	33, 82, 328, 417
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	1 cut(s)	351
RsaI	GTAC	2 cut(s)	193, 215
RsaNI	GTAC	2 cut(s)	192, 214
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	4 cut(s)	33, 82, 328, 417
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	3 cut(s)	209, 268, 324
Sse9I	AATT	6 cut(s)	62, 110, 138, 163, 294, 339
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	349, 377
TasI	AATT	6 cut(s)	62, 110, 138, 163, 294, 339
TatI	WGTACW	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	3 cut(s)	63, 87, 324
XapI	RAATTY	2 cut(s)	110, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.