Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003252.1

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Forward (+)

80077 .. 80732

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003252.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atggccaaaaaaagcaattctttagttgttgtagatttttatcgtacttcctgtggaagctgcaagtacatagagcaagggttttcaaagttatgcaagagggctggtgaaggagaagctgaagtaatcttcttgaagcacaatgtaattgatgagtatgatgaacaatccgaggttgcagatcggcttagaattaagacggtgcccctcttccacttctataaagacggtgttctcttggaagcattcccaaccagggacaaggagaggatcactgcagcaattcgtaaatacacatctcctgaaacatctgaattgatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

107

Amino Acids

12.27

Weight (kDa)

6.73

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	46, 68
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	87, 136
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	60, 119
AluI	AGCT	2 cut(s)	60, 119
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	60, 278
AsuHPI	GGTGA	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	47, 290
BciT130I	CCWGG	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	61, 279
BlsI	GCNGC	2 cut(s)	62, 280
Bme1390I	CCNGG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	171, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	171, 255
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	47, 290
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	181, 270
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	202
BssECI	CCNNGG	2 cut(s)	171, 255
BssMI	GATC	2 cut(s)	181, 270
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	2 cut(s)	202, 230
Bst6I	CTCTTC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	184, 273
BstMBI	GATC	2 cut(s)	181, 270
BstNI	CCWGG	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	47, 290
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	45, 67
CviJI	RGCY	5 cut(s)	5, 60, 104, 119, 187
CviKI_1	RGCY	5 cut(s)	5, 60, 104, 119, 187
CviQI	GTAC	2 cut(s)	45, 67
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	183, 272
DpnII	GATC	2 cut(s)	181, 270
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	254
FaiI	YATR	4 cut(s)	71, 94, 159, 222
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	61, 279
Fsp4HI	GCNGC	2 cut(s)	61, 279
GluI	GCNGC	2 cut(s)	61, 279
HaeIII	GGCC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	172, 313
Hpy188III	TCNNGA	2 cut(s)	133, 302
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	202, 230
HpyCH4V	TGCA	4 cut(s)	63, 96, 179, 278
HpyF3I	CTNAG	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	181, 270
LpnPI	CCDG	5 cut(s)	64, 90, 241, 268, 315
Lsp1109I	GCAGC	2 cut(s)	47, 290
MalI	GATC	2 cut(s)	183, 272
MboI	GATC	2 cut(s)	181, 270
MboII	GAAGA	2 cut(s)	121, 202
MhlI	GDGCHC	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	16, 147, 192, 282, 314
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	93, 166, 218, 261
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	181, 270
NlaIV	GGNNCC	1 cut(s)	204
PctI	GAATGC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	62, 280
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	204
PstI	CTGCAG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	46, 68
RsaNI	GTAC	2 cut(s)	45, 67
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	61, 279
Sau3AI	GATC	2 cut(s)	181, 270
ScrFI	CCNGG	1 cut(s)	256
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	3 cut(s)	62, 121, 177
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	5 cut(s)	16, 147, 192, 282, 314
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	2 cut(s)	202, 230
TasI	AATT	5 cut(s)	16, 147, 192, 282, 314
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	2 cut(s)	60, 278
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.