Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

3233401 .. 3235020

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G002000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGCCAGAGGCCAAATCGGAACTCTTCAAGGCCGAGGACTCATTCAATTTTGGATCAAAACCATTCTTAAAAAGTCCATATGAAACTCCTATCTCATTTTCTGAGAGAACACATGTTGGATTATGCCCTAGCATCAGAATTACAAGTTGGGAAGTTTCAAAGTTTAGCTATGGATTTCGTGCTATAAAGAAGAACAGAATGGCTGATGAAAATCAAGGAGAATTGTCTGATGAAGATGATGATATGTGTCCAGTTGAATGTGTTAGAGAATTTTATCTAATGAAGAGTTCTTCAAAATTCTTGATACGGCCAAAAAAAAAAAAAAACAATGCTTTAGTTGTTGTAGATTTTTATCGCACCTTGTGTGGAAGCTGCAAGTACATAGAGCAAGAGTTTTCAAACAATCTTCTTAAAGCACAATGTGAGTATGGCATGGATATAGTAATCTTATTTTATTTCCATCCGAAGTCGTTGAACTTTCTTTTAATAGCTCAATACATAATTCTAAAAGGGTATTTGCTACAGGTAATTGATGAGTATGATGAACAATCCGAGGTTGCAGACTGGATTAGAATTAAGATGGTCCCCCTCTTCCATGTCTATAAAGATGGTGTTCTCTTGGAAGCATTCCCAACTAGAGACGAGGAGAGGATCACTGCGGTAATTTGTAAATACACATCTCCTGCAACATCTGAATTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

235

Amino Acids

27.28

Weight (kDa)

5.57

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	2 cut(s)	64, 662
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	272, 299
AdeI	CACNNNGTG	2 cut(s)	366, 425
AfaI	GTAC	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	7 cut(s)	31, 49, 162, 260, 297, 402, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	171, 375, 494
AluI	AGCT	3 cut(s)	171, 375, 494
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	64, 662
AoxI	GGCC	3 cut(s)	12, 33, 311
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	272, 299
AspS9I	GGNCC	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	471, 577, 605
BceAI	ACGGC	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	2 cut(s)	132, 639
BfmI	CTRYAG	1 cut(s)	524
BisI	GCNGC	1 cut(s)	376
BlsI	GCNGC	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	586
BmiI	GGNNCC	2 cut(s)	6, 588
BmsI	GCATC	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	213, 354
BsaJI	CCNNGG	2 cut(s)	36, 555
Bse1I	ACTGG	2 cut(s)	254, 572
Bse8I	GATNNNNATC	2 cut(s)	213, 354
BseDI	CCNNGG	2 cut(s)	36, 555
BseGI	GGATG	1 cut(s)	463
BseJI	GATNNNNATC	2 cut(s)	213, 354
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	254, 572
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	362
BshFI	GGCC	3 cut(s)	14, 35, 313
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	636
BsmBI	CGTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	3 cut(s)	14, 35, 313
Bsp143I	GATC	2 cut(s)	56, 654
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	3 cut(s)	14, 35, 313
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	6, 588
BspPI	GGATC	2 cut(s)	64, 662
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	254, 572
BssECI	CCNNGG	2 cut(s)	36, 555
BssMI	GATC	2 cut(s)	56, 654
Bst6I	CTCTTC	3 cut(s)	32, 281, 599
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	59, 657
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	2 cut(s)	56, 654
BstNSI	RCATGY	1 cut(s)	119
BstSFI	CTRYAG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	14, 35, 313
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	657
Cfr13I	GGNCC	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	3 cut(s)	116, 436, 599
CviJI	RGCY	7 cut(s)	14, 35, 171, 206, 313, 375, 494
CviKI_1	RGCY	7 cut(s)	14, 35, 171, 206, 313, 375, 494
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	58, 656
DpnII	GATC	2 cut(s)	56, 654
DraIII	CACNNNGTG	2 cut(s)	366, 425
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	3 cut(s)	32, 281, 599
EarI	CTCTTC	3 cut(s)	32, 281, 599
Eco47I	GGWCC	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	636
FaeI	CATG	3 cut(s)	119, 439, 602
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	3 cut(s)	115, 435, 598
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	2 cut(s)	132, 639
GluI	GCNGC	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	14, 35, 313
Hin1II	CATG	3 cut(s)	119, 439, 602
HinfI	GANTC	1 cut(s)	41
Hpy188I	TCNGA	7 cut(s)	22, 106, 140, 232, 468, 556, 697
Hpy188III	TCNNGA	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	378, 563, 689
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	119, 439, 602
Kzo9I	GATC	2 cut(s)	56, 654
LpnPI	CCDG	5 cut(s)	21, 267, 512, 553, 699
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	132, 639
MalI	GATC	2 cut(s)	58, 656
MboI	GATC	2 cut(s)	56, 654
MboII	GAAGA	7 cut(s)	19, 205, 248, 285, 298, 401, 586
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	4, 31, 550, 602, 640, 645
MseI	TTAA	4 cut(s)	71, 414, 488, 579
Mva1269I	GAATGC	1 cut(s)	629
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	2 cut(s)	56, 654
NlaIII	CATG	3 cut(s)	119, 439, 602
NlaIV	GGNNCC	2 cut(s)	6, 588
NmeAIII	GCCGAG	1 cut(s)	61
NspI	RCATGY	1 cut(s)	119
PciI	ACATGT	1 cut(s)	115
PctI	GAATGC	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	377
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	6, 588
PspPI	GGNCC	1 cut(s)	586
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	71, 414, 488, 579
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	56, 654
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	1 cut(s)	35
SetI	ASST	6 cut(s)	173, 365, 377, 496, 531, 561
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	1 cut(s)	586
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	2 cut(s)	132, 639
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	4 cut(s)	71, 414, 488, 579
Tru9I	TTAA	4 cut(s)	71, 414, 488, 579
TscAI	CASTG	1 cut(s)	664
TseI	GCWGC	1 cut(s)	375
TspDTI	ATGAA	5 cut(s)	99, 225, 249, 299, 561
TspRI	CASTG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	2 cut(s)	272, 299
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	2 cut(s)	132, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.