Rh2AG402600

Thioredoxin-like 4

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
60006291 .. 60007844
1554 bp
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UTR
Exon/CDS
Intron
Rh2AG402600.1

Sequence Viewer

Length: 369 bp
ATGCATAGACAGAATGTTCTTTATAGCAAGGCCGAGGCCTCATTCAATTTTGGATCAAAACCATTTATAAAAAGTCCATATGAAATTCCTATCTCATTTTCTGAGAGAACACATGTTGGATTATGCCCTAGCATCAGAATTACAGGTTGGGAAGTTTCAAAGTTTAGCTATGGATTTCGTGCTATAAAGAAGATCAGAGTGGCTGATGAAAATCAAGGAGAATTGTCTGATGAAGATGATGATCTGTGTCCAGTTGAATGTGTTAGAGAATTTTATCTGATGAAGAGTTCTTCAAAATTCTTGATACGGCCAAAAAAAAAAAACAATTCTTTAGTTATCGGACCTTGTGTGGAAGCTGCAAGTACATAG

Protein Analysis

122

Amino Acids

13.84

Weight (kDa)

8.69

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 3 cut(s) 84, 269, 296
AfaI GTAC 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 46, 159, 257, 294
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 2 cut(s) 168, 356
AluI AGCT 2 cut(s) 168, 356
AlwI GGATC 1 cut(s) 61
AoxI GGCC 3 cut(s) 30, 36, 308
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 3 cut(s) 84, 269, 296
AspS9I GGNCC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 323
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmsI GCATC 1 cut(s) 141
BsaBI GATNNNNATC 2 cut(s) 210, 240
BsaJI CCNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 2 cut(s) 210, 240
BseDI CCNNGG 1 cut(s) 33
BseJI GATNNNNATC 2 cut(s) 210, 240
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 3 cut(s) 32, 38, 310
BsnI GGCC 3 cut(s) 32, 38, 310
Bsp143I GATC 3 cut(s) 53, 192, 241
BspANI GGCC 3 cut(s) 32, 38, 310
BspCNI CTCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 3 cut(s) 53, 192, 241
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 3 cut(s) 56, 195, 244
BstMBI GATC 3 cut(s) 53, 192, 241
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 343
BsuRI GGCC 3 cut(s) 32, 38, 310
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 363
CviAII CATG 1 cut(s) 113
CviJI RGCY 6 cut(s) 32, 38, 168, 203, 310, 356
CviKI_1 RGCY 6 cut(s) 32, 38, 168, 203, 310, 356
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 55, 194, 243
DpnII GATC 3 cut(s) 53, 192, 241
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 116
FatI CATG 1 cut(s) 112
FauNDI CATATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 3 cut(s) 32, 38, 310
Hin1II CATG 1 cut(s) 116
Hpy188I TCNGA 6 cut(s) 103, 137, 197, 229, 279, 341
Hpy188III TCNNGA 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 4, 359
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 3 cut(s) 53, 192, 241
LpnPI CCDG 2 cut(s) 129, 264
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 55, 194, 243
MboI GATC 3 cut(s) 53, 192, 241
MboII GAAGA 4 cut(s) 202, 245, 282, 295
MluCI AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 325
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 28, 49
Mph1103I ATGCAT 1 cut(s) 6
NdeI CATATG 1 cut(s) 79
NdeII GATC 3 cut(s) 53, 192, 241
NlaIII CATG 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 116
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 112
PkrI GCNGC 1 cut(s) 358
PscI ACATGT 1 cut(s) 112
PsiI TTATAA 1 cut(s) 68
PspPI GGNCC 1 cut(s) 341
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 53, 192, 241
Sau96I GGNCC 1 cut(s) 341
SetI ASST 4 cut(s) 148, 170, 346, 358
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 1 cut(s) 341
Sse9I AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 325
SseBI AGGCCT 1 cut(s) 38
SspMI CTAG 1 cut(s) 129
StuI AGGCCT 1 cut(s) 38
TasI AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 325
TatI WGTACW 1 cut(s) 362
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 4 cut(s) 96, 222, 246, 296
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 3 cut(s) 84, 269, 296
XceI RCATGY 1 cut(s) 116
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.