Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004324

Physical Location & Seq

Genomic Coordinates Reverse (-)

8543286 .. 8544727

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGATGCACAGGCAGAGCATTCTTTACGGTAAGGCCAAAGCCCCATCCAACTTTGTCACGAAACCAAACACAAAACTCGGTTCAACGAGTCCCTCCCAAGTTAAATCACGTCTTCTGAGAGCCAGAAATCCATCAACCATCATCAAAACTACGGCGCTGGAAGTTTCGGGATTCCGCGGCGCATTCGGGCACGTAGAGGCCCGAGTGGCGATGGGAAACCTAGGAGAATTGTCCGAAGAGGACGACGACGACGTGTGTCCCGTTGAATGTGTTAGAGAGTTTAGGACTGACGAGGAGTTCAGCAAAATTCTTGAAAGGGCTAGAGAAAGTGGTGCTTTGGTTGTAGTGGATTTTTATCGGACTTCGTGTGGGAGCTGCAAGTACATAGAGCAAGGGTTTTCAAAGTTGTGCAAGGGAGCTGGCGATGGAGAAGCTGCTGTTATCTTCTTAAAGCATAATGTAATTGATGAGTACGATGAACAATCCGAGGTTGCTGATCGACTTAGAATTAAGACGGTGCCCCTCTTCCATTTCTATAAAGACGGAGTCCTTTTGGAAGCATTCCCTACCAGAGACAAAGAGAGGATCACTGCAGCCATTAGTAAATACACAACTCCAGCTTCTCAAGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

212

Amino Acids

23.48

Weight (kDa)

6.45

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	96 - 200	1.7e-11	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07700 AT1G07700 AT1G07700 AT1G07700
fragaria_vesca	FvH4_2g34430 FvH4_2g34430 FvH4_2g34430
malus_domestica	MD08G1101500.v1.1 MD15G1082700.v1.1
prunus_persica	Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1 Prupe.1G435400_v2.0.a1
pyrus_communis	pycom08g08200 pycom15g07750
rosa_chinensis	RchiOBHm_Chr2g0138871 RchiOBHm_Chr6g0307941
rosa_laevigata	RLG00000010685
rosa_multiflora	Rmu_co8456761.1_g000001 Rmu_sc0003252.1_g000021
rosa_roxburghii	Rroxscaffold_7G00160750
rosa_rugosa	Rorug06G0362000 Rorug06G0362000
rosa_samantha	Rh2AG402600 Rh2CG388700 Rh2DG422900 Rh6AG470900 Rh6BG481900 Rh6CG487300 Rh6DG473400
rosa_wichuraiana	Rw2G032760 Rw6G002000 Rw6G041120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	175, 177
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	2 cut(s)	383, 473
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	84, 266, 314, 402
AjiI	CACGTC	2 cut(s)	110, 253
AluBI	AGCT	4 cut(s)	375, 419, 434, 620
AluI	AGCT	4 cut(s)	375, 419, 434, 620
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	33, 198
ApeKI	GCWGC	3 cut(s)	375, 434, 593
ApoI	RAATTY	1 cut(s)	306
AspA2I	CCTAGG	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	157, 182
AspS9I	GGNCC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	220
BaeGI	GKGCMC	2 cut(s)	192, 522
BanI	GGYRCC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	362, 421, 605
BccI	CCATC	5 cut(s)	52, 139, 146, 205, 419
BceAI	ACGGC	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	2 cut(s)	221, 321
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	4 cut(s)	178, 376, 435, 594
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	4 cut(s)	179, 377, 436, 595
BmeT110I	CYCGRG	1 cut(s)	201
BmgBI	CACGTC	2 cut(s)	110, 253
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	519
BoxI	GACNNNNGTC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	175, 220, 486
Bse8I	GATNNNNATC	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	175, 220, 486
BseGI	GGATG	1 cut(s)	44
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	2 cut(s)	192, 522
BseXI	GCAGC	3 cut(s)	362, 421, 605
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	35, 200
BshNI	GGYRCC	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	75, 243
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	75, 243
BsmI	GAATGC	3 cut(s)	18, 182, 560
BsnI	GGCC	2 cut(s)	35, 200
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	192, 522
Bsp143I	GATC	2 cut(s)	496, 585
BspACI	CCGC	2 cut(s)	175, 177
BspANI	GGCC	2 cut(s)	35, 200
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	519
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	175, 220, 486
BssMI	GATC	2 cut(s)	496, 585
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	29, 517
Bst6I	CTCTTC	2 cut(s)	231, 530
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	116, 503
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 182
BstKTI	GATC	2 cut(s)	499, 588
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	2 cut(s)	496, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	2 cut(s)	192, 522
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	362, 421, 605
BstV2I	GAAGAC	1 cut(s)	104
BsuRI	GGCC	2 cut(s)	35, 200
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	2 cut(s)	224, 438
BtrI	CACGTC	2 cut(s)	110, 253
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	157, 182
Cfr13I	GGNCC	1 cut(s)	199
Cfr42I	CCGCGG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	382, 472
CviQI	GTAC	2 cut(s)	382, 472
DdeI	CTNAG	2 cut(s)	116, 503
DpnI	GATC	2 cut(s)	498, 587
DpnII	GATC	2 cut(s)	496, 585
Eam1104I	CTCTTC	2 cut(s)	231, 530
EarI	CTCTTC	2 cut(s)	231, 530
Eco130I	CCWWGG	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaiI	YATR	3 cut(s)	386, 456, 537
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FaqI	GGGAC	2 cut(s)	75, 243
Fnu4HI	GCNGC	4 cut(s)	178, 376, 435, 594
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	178, 376, 435, 594
FspBI	CTAG	2 cut(s)	221, 321
GlaI	GCGC	2 cut(s)	156, 181
GluI	GCNGC	4 cut(s)	178, 376, 435, 594
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	35, 200
HhaI	GCGC	2 cut(s)	157, 182
Hin6I	GCGC	2 cut(s)	155, 180
HinP1I	GCGC	2 cut(s)	155, 180
HinfI	GANTC	3 cut(s)	88, 171, 546
Hpy188I	TCNGA	4 cut(s)	117, 235, 360, 487
Hpy188III	TCNNGA	4 cut(s)	58, 168, 311, 626
Hpy99I	CGWCG	3 cut(s)	248, 251, 254
HpyCH4III	ACNGT	2 cut(s)	29, 517
HpyCH4IV	ACGT	3 cut(s)	109, 192, 252
HpyCH4V	TGCA	4 cut(s)	7, 378, 411, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	116, 503
HpySE526I	ACGT	3 cut(s)	109, 192, 252
HspAI	GCGC	2 cut(s)	155, 180
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	496, 585
LmnI	GCTCC	2 cut(s)	372, 416
LpnPI	CCDG	5 cut(s)	136, 143, 405, 583, 630
Lsp1109I	GCAGC	3 cut(s)	362, 421, 605
MaeI	CTAG	2 cut(s)	221, 321
MaeII	ACGT	3 cut(s)	109, 192, 252
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	498, 587
MboI	GATC	2 cut(s)	496, 585
MboII	GAAGA	4 cut(s)	104, 248, 436, 517
MhlI	GDGCHC	2 cut(s)	192, 522
MluCI	AATT	4 cut(s)	227, 306, 462, 507
MlyI	GAGTC	2 cut(s)	97, 555
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	103, 190, 232, 286, 481, 533, 576
MseI	TTAA	3 cut(s)	102, 449, 510
MspA1I	CMGCKG	1 cut(s)	177
Mva1269I	GAATGC	3 cut(s)	18, 182, 560
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	2 cut(s)	496, 585
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 258
PctI	GAATGC	3 cut(s)	18, 182, 560
PfeI	GAWTC	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	545
PkrI	GCNGC	4 cut(s)	179, 377, 436, 595
PleI	GAGTC	2 cut(s)	96, 554
PpsI	GAGTC	2 cut(s)	96, 554
Ppu21I	YACGTR	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	545
RsaI	GTAC	2 cut(s)	383, 473
RsaNI	GTAC	2 cut(s)	382, 472
SacII	CCGCGG	1 cut(s)	178
SaqAI	TTAA	3 cut(s)	102, 449, 510
SatI	GCNGC	4 cut(s)	178, 376, 435, 594
Sau3AI	GATC	2 cut(s)	496, 585
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	97, 555
SduI	GDGCHC	2 cut(s)	192, 522
SetI	ASST	9 cut(s)	112, 195, 222, 255, 377, 421, 436, 492, 622
SfcI	CTRYAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse9I	AATT	4 cut(s)	227, 306, 462, 507
SsiI	CCGC	2 cut(s)	175, 177
SspMI	CTAG	2 cut(s)	221, 321
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	29, 517
TaiI	ACGT	3 cut(s)	112, 195, 255
TaqI	TCGA	1 cut(s)	499
TasI	AATT	4 cut(s)	227, 306, 462, 507
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	102, 449, 510
Tru9I	TTAA	3 cut(s)	102, 449, 510
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	375, 434, 593
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	221, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.