Rh2DG422900

Thioredoxin-like 4

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
61280647 .. 61283150
2504 bp
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UTR
Exon/CDS
Intron
Rh2DG422900.1

Sequence Viewer

Length: 351 bp
ATGCATAGACAGAATGTTCTTTATAGAAAGGCCGAGGCCTCATTCAATTTTGGATCAAAACCATTTATAAAAAGTCCATATGAAATTCCTATCTCATTTCCTGAGAGAACACATGTTGGATTATGCCCTAGCATCAGAATTACAGGTTGGGAAGTTTCAAAGTTTAGCTATGGATTTCGTGCTATAAAGAAGATCATAGTGGCTGATGAAAATCAAGGAGAATTGTCTGATGAAGATGATGATCTGTGTCCCGTTGAATGTGTTAGAGAATTTTATCTGATGAAGAGTTCTTCAAAATTCTTGATACGGACAAAAAAAAAAAAACAATTCTTTAGTTGTTGTAGATTTTAA

Protein Analysis

116

Amino Acids

13.57

Weight (kDa)

9.16

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 3 cut(s) 84, 269, 296
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 46, 159, 257, 294
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 30, 36
ApoI RAATTY 3 cut(s) 84, 269, 296
BfaI CTAG 1 cut(s) 129
BmsI GCATC 1 cut(s) 141
BsaBI GATNNNNATC 2 cut(s) 210, 240
BsaJI CCNNGG 1 cut(s) 33
Bse8I GATNNNNATC 2 cut(s) 210, 240
BseDI CCNNGG 1 cut(s) 33
BseJI GATNNNNATC 2 cut(s) 210, 240
BseMII CTCAG 1 cut(s) 93
BshFI GGCC 2 cut(s) 32, 38
BslFI GGGAC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 2 cut(s) 32, 38
Bsp143I GATC 3 cut(s) 53, 192, 241
BspANI GGCC 2 cut(s) 32, 38
BspCNI CTCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 3 cut(s) 53, 192, 241
Bst6I CTCTTC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 3 cut(s) 56, 195, 244
BstMBI GATC 3 cut(s) 53, 192, 241
BstNSI RCATGY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 32, 38
CviAII CATG 1 cut(s) 113
CviJI RGCY 4 cut(s) 32, 38, 168, 203
CviKI_1 RGCY 4 cut(s) 32, 38, 168, 203
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 55, 194, 243
DpnII GATC 3 cut(s) 53, 192, 241
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 38
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 116
FaqI GGGAC 1 cut(s) 234
FatI CATG 1 cut(s) 112
FauNDI CATATG 1 cut(s) 79
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 32, 38
Hin1II CATG 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 137, 229, 279
Hpy188III TCNNGA 2 cut(s) 101, 301
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 3 cut(s) 53, 192, 241
LpnPI CCDG 2 cut(s) 114, 129
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 55, 194, 243
MboI GATC 3 cut(s) 53, 192, 241
MboII GAAGA 4 cut(s) 202, 245, 282, 295
MluCI AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 326
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 28, 49
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 349
NdeI CATATG 1 cut(s) 79
NdeII GATC 3 cut(s) 53, 192, 241
NlaIII CATG 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 116
PceI AGGCCT 1 cut(s) 38
PciI ACATGT 1 cut(s) 112
PscI ACATGT 1 cut(s) 112
PsiI TTATAA 1 cut(s) 68
SaqAI TTAA 1 cut(s) 349
Sau3AI GATC 3 cut(s) 53, 192, 241
SetI ASST 2 cut(s) 148, 170
SfaNI GCATC 1 cut(s) 141
SgeI CNNG 9 cut(s) 46, 113, 125, 141, 156, 191, 227, 263, 313
Sse9I AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 326
SseBI AGGCCT 1 cut(s) 38
SspMI CTAG 1 cut(s) 129
StuI AGGCCT 1 cut(s) 38
TasI AATT 7 cut(s) 46, 84, 138, 221, 269, 296, 326
Tru1I TTAA 1 cut(s) 349
Tru9I TTAA 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 96, 222, 246, 296
TspGWI ACGGA 1 cut(s) 322
XapI RAATTY 3 cut(s) 84, 269, 296
XceI RCATGY 1 cut(s) 116
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.