AT1G09155

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007714
Physical Location & Seq
Reverse (-)
2949621 .. 2950989
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09155.1

Sequence Viewer

Length: 870 bp
ATGATGTTACCAGAAGCATGCGTGGCGACTATCCTCTCATTTACAACTCCGGCTGACACAATCTCGTCGGCGGCTGTCTCATCAGTTTTCCGAGTCGCCGGAGACTCTGACTTTGTGTGGGAGAAGTTTTTACCGACCGATTACTGCCACGTCATCTCTAGATCGACTGATCCTCACCGAATTTTCTCTTCTAAAAAGGAGCTTTATCGATGTCTCTGTGAATCAATTCTCATCGATAATGGCAGAAAGATTTTCAAGATCGAGAAGCTTTCAGGGAAAATATCGTATATTTTGTCGTCAAGAGATCTTTCCATAACTTGGAGCGATCAAAGACATTACTGGTCTTGGAGCCCACGATCAGATTCAAGGTTTTCCGAAGGAGTCCAACTTATAATGACAGATTGGTTAGAAATCATCGGAAAAATCCAAACCGGAGCTTTATCGCCGAACACAAACTACGGAGCTTATCTGATTATGAAAGTAACGTCACGTGCCTATGGACTAGACCTAGTTCCGGCAGAGACATCGATAAAAGTGGGAAATGGTGAAAAGAAAATAAAGTCAACTTATCTAAGTTGCTTGGATAACAAGAAACAACAAATGGAACGTGTGTTTTACGGACAAAGAGAACAGAGGATGGCGACGCATGAGGTTGTCCGAAGTCATCGGAGGGAGCCAGAGGTGAGAGACGATGGGTGGATGGAGATAGAGCTGGGAGAGTTCGAGACAGGATCAGGAGAAGGTGATGACGACAAGGAGGTTGTTATGAGTCTGACTGAAGTTAAAGGTTATCAATTGAAGGGTGGAATTGCCATTGATGGGATTGAAGTAAGGCCTAAACCCCTAAAAGTGAGGGCCGGGACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0030246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

289

Amino Acids

32.67

Weight (kDa)

6.55

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 93 - 279 3.1e-49 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 164, 739
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 798
AcvI CACGTG 1 cut(s) 491
AfiI CCNNNNNNNGG 3 cut(s) 318, 514, 819
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 4 cut(s) 256, 366, 799, 827
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 5 cut(s) 202, 268, 437, 464, 712
AluI AGCT 5 cut(s) 202, 268, 437, 464, 712
Alw26I GTCTC 6 cut(s) 82, 96, 218, 515, 681, 719
AlwI GGATC 2 cut(s) 164, 739
AoxI GGCC 2 cut(s) 833, 855
ApoI RAATTY 1 cut(s) 180
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 855, 861
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 4 cut(s) 167, 557, 694, 755
AvaII GGWCC 1 cut(s) 861
BanII GRGCYC 1 cut(s) 353
BbrPI CACGTG 1 cut(s) 491
BccI CCATC 4 cut(s) 631, 686, 694, 812
BcgI CGANNNNNNTGC 2 cut(s) 507, 541
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 6 cut(s) 82, 96, 218, 515, 681, 719
BfaI CTAG 3 cut(s) 159, 503, 509
BglII AGATCT 1 cut(s) 304
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 861
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 855, 861
BmiI GGNNCC 3 cut(s) 350, 675, 862
BmrFI CCNGG 1 cut(s) 859
BpuMI CCSGG 1 cut(s) 859
Bsa29I ATCGAT 3 cut(s) 208, 234, 527
BsaAI YACGTR 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 431
Bsc4I CCNNNNNNNGG 3 cut(s) 318, 514, 819
Bse1I ACTGG 1 cut(s) 344
BseCI ATCGAT 3 cut(s) 208, 234, 527
BseGI GGATG 2 cut(s) 642, 705
BseLI CCNNNNNNNGG 3 cut(s) 318, 514, 819
BseNI ACTGG 1 cut(s) 344
BseYI CCCAGC 1 cut(s) 712
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 835, 857
BshVI ATCGAT 3 cut(s) 208, 234, 527
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 5 cut(s) 50, 99, 432, 515, 858
BslI CCNNNNNNNGG 3 cut(s) 318, 514, 819
BsmAI GTCTC 6 cut(s) 82, 96, 218, 515, 681, 719
BsmBI CGTCTC 1 cut(s) 681
BsnI GGCC 2 cut(s) 835, 857
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 835, 857
BspDI ATCGAT 3 cut(s) 208, 234, 527
BspLI GGNNCC 3 cut(s) 350, 675, 862
BspPI GGATC 2 cut(s) 164, 739
BsrI ACTGG 1 cut(s) 344
BssMI GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
Bst6I CTCTTC 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 642, 705
BstKTI GATC 7 cut(s) 164, 172, 261, 307, 328, 359, 734
BstMAI GTCTC 6 cut(s) 82, 96, 218, 515, 681, 719
BstMBI GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
Bsu15I ATCGAT 3 cut(s) 208, 234, 527
BsuRI GGCC 2 cut(s) 835, 857
BsuTUI ATCGAT 3 cut(s) 208, 234, 527
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 642, 705
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 855, 861
ClaI ATCGAT 3 cut(s) 208, 234, 527
CseI GACGC 1 cut(s) 652
CviAII CATG 2 cut(s) 18, 647
DdeI CTNAG 1 cut(s) 572
DpnI GATC 7 cut(s) 163, 171, 260, 306, 327, 358, 733
DpnII GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 835
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 798
Eco72I CACGTG 1 cut(s) 491
EcoT38I GRGCYC 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 681
FaeI CATG 2 cut(s) 21, 650
FaiI YATR 8 cut(s) 19, 288, 314, 392, 476, 498, 648, 767
FatI CATG 2 cut(s) 17, 646
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 649, 712
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 159, 503, 509
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 716
HaeIII GGCC 2 cut(s) 835, 857
HapII CCGG 5 cut(s) 50, 99, 432, 515, 858
HgaI GACGC 1 cut(s) 652
Hin1II CATG 2 cut(s) 21, 650
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 6 cut(s) 93, 104, 221, 362, 381, 769
HpaII CCGG 5 cut(s) 50, 99, 432, 515, 858
HphI GGTGA 4 cut(s) 167, 557, 694, 755
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 9 cut(s) 92, 109, 361, 376, 419, 471, 659, 669, 774
Hpy188III TCNNGA 6 cut(s) 159, 256, 262, 300, 724, 735
Hpy8I GTNNAC 1 cut(s) 564
Hpy99I CGWCG 2 cut(s) 70, 646
HpyAV CCTTC 3 cut(s) 371, 734, 793
HpyCH4IV ACGT 4 cut(s) 150, 485, 490, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 572
HpySE526I ACGT 4 cut(s) 150, 485, 490, 607
Hsp92II CATG 2 cut(s) 21, 650
Kzo9I GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
LmnI GCTCC 6 cut(s) 199, 321, 348, 434, 461, 673
MaeI CTAG 3 cut(s) 159, 503, 509
MaeII ACGT 4 cut(s) 150, 485, 490, 607
MaeIII GTNAC 3 cut(s) 6, 481, 486
MalI GATC 7 cut(s) 163, 171, 260, 306, 327, 358, 733
MboI GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
MboII GAAGA 1 cut(s) 180
MfeI CAATTG 1 cut(s) 794
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 4 cut(s) 180, 225, 794, 807
MlyI GAGTC 4 cut(s) 98, 102, 390, 778
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 8 cut(s) 44, 183, 627, 643, 663, 673, 751, 846
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 783
MspI CCGG 5 cut(s) 50, 99, 432, 515, 858
MspR9I CCNGG 1 cut(s) 859
MunI CAATTG 1 cut(s) 794
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 859
NdeII GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
NlaIII CATG 2 cut(s) 21, 650
NlaIV GGNNCC 3 cut(s) 350, 675, 862
NmuCI GTSAC 1 cut(s) 486
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PceI AGGCCT 1 cut(s) 835
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 221, 362
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 4 cut(s) 98, 101, 389, 777
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 4 cut(s) 98, 101, 389, 777
Ppu21I YACGTR 1 cut(s) 491
PsiI TTATAA 1 cut(s) 392
PspCI CACGTG 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 712
PspN4I GGNNCC 3 cut(s) 350, 675, 862
PspPI GGNCC 2 cut(s) 855, 861
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PsuI RGATCY 1 cut(s) 304
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 7 cut(s) 161, 169, 258, 304, 325, 356, 731
Sau96I GGNCC 2 cut(s) 855, 861
SchI GAGTC 4 cut(s) 98, 102, 390, 778
ScrFI CCNGG 1 cut(s) 859
SduI GDGCHC 1 cut(s) 353
SinI GGWCC 1 cut(s) 861
SphI GCATGC 1 cut(s) 21
Sse9I AATT 4 cut(s) 180, 225, 794, 807
SseBI AGGCCT 1 cut(s) 835
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 159, 503, 509
StuI AGGCCT 1 cut(s) 835
StyD4I CCNGG 1 cut(s) 857
TaiI ACGT 4 cut(s) 153, 488, 493, 610
TaqI TCGA 6 cut(s) 164, 208, 234, 261, 527, 723
TaqII GACCGA 1 cut(s) 152
TasI AATT 4 cut(s) 180, 225, 794, 807
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 221, 362
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 1 cut(s) 491
TspGWI ACGGA 2 cut(s) 474, 633
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 861
XapI RAATTY 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 3 cut(s) 159, 503, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.