Rh5DG534700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007714
Physical Location & Seq
Reverse (-)
82392879 .. 82395194
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG534700.1

Sequence Viewer

Length: 378 bp
ATGAGTAGTCAATTGCTATCACCAAAAACAGTTTATAGTGCTCACCTTGTTACCAAGTTGGCCAATCGTGCATATGGTTTGGACTCATTGCCTTCTGAGGTTTCACTTGAAGTCGGCAATTTCAAATCACAAGGCACTGTATACTTGAGTGCAAATCGGAAGGCAACAGAAGTAGGCGAACATGTGAGAGCAATCAGGGTTCTGGAAGAACGTCTTCGTGAGCAAACAGATGGATGGATGGAGATTGAACTGGGGAGCTTCTACAATGATGGATGTTATTATAACAAGGATGTGAAGGTGAGCCTAAAAGAAGTTAAGGGTGCACACCTAAAAGGTGGCCTTATTGTTGAGGGAATTGAGATTAGGCCAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

125

Amino Acids

13.96

Weight (kDa)

7.85

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 2 - 123 2.8e-26 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccI GTMKAC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 3 cut(s) 110, 124, 248
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw21I GWGCWC 2 cut(s) 43, 325
Alw44I GTGCAC 1 cut(s) 321
AoxI GGCC 3 cut(s) 60, 337, 365
ApaLI GTGCAC 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 12, 35, 310
BaeGI GKGCMC 1 cut(s) 325
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 2 cut(s) 43, 325
BccI CCATC 4 cut(s) 224, 228, 232, 263
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 86
BseGI GGATG 4 cut(s) 239, 243, 278, 295
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 325
BshFI GGCC 3 cut(s) 62, 339, 367
BsiHKAI GWGCWC 2 cut(s) 43, 325
BsnI GGCC 3 cut(s) 62, 339, 367
Bsp1286I GDGCHC 2 cut(s) 43, 325
BspANI GGCC 3 cut(s) 62, 339, 367
BspCNI CTCAG 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 86
BsrI ACTGG 1 cut(s) 255
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 31, 139
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 239, 243, 278, 295
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 206
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 3 cut(s) 62, 339, 367
BtsCI GGATG 4 cut(s) 239, 243, 278, 295
BtsIMutI CAGTG 1 cut(s) 135
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 62, 258, 303, 339, 367
CviKI_1 RGCY 5 cut(s) 62, 258, 303, 339, 367
DdeI CTNAG 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 60
FaeI CATG 1 cut(s) 185
FaiI YATR 6 cut(s) 36, 73, 75, 142, 183, 282
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 324, 356
FatI CATG 1 cut(s) 181
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 141
FokI GGATG 4 cut(s) 246, 250, 285, 302
HaeIII GGCC 3 cut(s) 62, 339, 367
Hin1II CATG 1 cut(s) 185
HinfI GANTC 1 cut(s) 83
HphI GGTGA 3 cut(s) 12, 35, 310
Hpy166II GTNNAC 2 cut(s) 142, 323
Hpy188I TCNGA 2 cut(s) 97, 159
Hpy188III TCNNGA 2 cut(s) 203, 218
Hpy8I GTNNAC 2 cut(s) 142, 323
HpyAV CCTTC 3 cut(s) 102, 154, 289
HpyCH4III ACNGT 2 cut(s) 31, 139
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 71, 152, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 1 cut(s) 185
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 3 cut(s) 181, 188, 236
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 49
MboII GAAGA 2 cut(s) 206, 218
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 43, 325
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 4 cut(s) 11, 118, 354, 373
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 2 cut(s) 91, 343
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 213
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 62
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeI CATATG 1 cut(s) 73
NlaIII CATG 1 cut(s) 185
NspI RCATGY 1 cut(s) 185
PciI ACATGT 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 213
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 181
PsiI TTATAA 1 cut(s) 282
SaqAI TTAA 1 cut(s) 315
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 43, 325
SetI ASST 7 cut(s) 48, 102, 214, 260, 300, 330, 337
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 4 cut(s) 11, 118, 354, 373
TaaI ACNGT 2 cut(s) 31, 139
TaiI ACGT 1 cut(s) 214
TasI AATT 4 cut(s) 11, 118, 354, 373
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 142
TspRI CASTG 1 cut(s) 142
VneI GTGCAC 1 cut(s) 321
XceI RCATGY 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.