Rh3AG073300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0007714
Physical Location & Seq
Reverse (-)
5899332 .. 5899936
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG073300.1

Sequence Viewer

Length: 508 bp
ATGTTCTCAATAGAGAAATCAACAGGTAAAAAATGTTACATGTTAAGTGCAAGGGATCTTTCAATTGCATGGGCGTGCAATCCTCTCTATTGGAGTTGGAAGTGTTCCTCCGAATCAAGATTTGCAGAGGTTGCTGAACTCAGAACCATCTGGTGGCTAGAAATATGTGGCACCATGAATAGTCAATTGCTATCACCAAAAACAGTTTATAGTGCTCATCTTGTTATCAAGTTGGCCAATCGTGCATATGGTTTGGACTCATTACCTTCTGAGATTTCACTTGAAGTTGGCAATTACAAATCACAAGGCACTGTATACTTGAGTGCAAGTCGGAAGGCAACAGAAGTAGACGAACGTGTGAGACCAATCAGGGTTCTGGAAGAACGTCTTCGTGAGCGAACAGATGGATGGATGGAGATTGAACTGGGGAGCTTTTACAATGATGGATGTTATTATAACAAGGATGTGAAGATGAGCCTAAAAGAAGTTAAGGGTGCACACCTAAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

169

Amino Acids

19.42

Weight (kDa)

8.54

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 10 - 169 9.3e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 153
AccI GTMKAC 2 cut(s) 315, 348
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 153
AflIII ACRYGT 2 cut(s) 39, 355
AgsI TTSAA 3 cut(s) 63, 284, 422
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
Alw21I GWGCWC 2 cut(s) 217, 499
Alw26I GTCTC 1 cut(s) 355
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 234
ApaLI GTGCAC 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 499
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 2 cut(s) 217, 499
BccI CCATC 5 cut(s) 155, 398, 402, 406, 437
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 429
BseGI GGATG 4 cut(s) 413, 417, 452, 469
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 154, 261
BseNI ACTGG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 499
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 217, 499
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 355
Bsp1286I GDGCHC 2 cut(s) 217, 499
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 153, 262
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 355
BsrI ACTGG 1 cut(s) 429
BssMI GATC 1 cut(s) 55
BssNAI GTATAC 1 cut(s) 316
Bst1107I GTATAC 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 205, 313
BstAPI GCANNNNNTGC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 140, 270
BstF5I GGATG 4 cut(s) 413, 417, 452, 469
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 131, 242
BstNSI RCATGY 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 4 cut(s) 413, 417, 452, 469
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 76
CviAII CATG 3 cut(s) 40, 69, 175
CviJI RGCY 4 cut(s) 157, 236, 432, 477
CviKI_1 RGCY 4 cut(s) 157, 236, 432, 477
DdeI CTNAG 2 cut(s) 140, 270
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 355
FaeI CATG 3 cut(s) 43, 72, 178
FaiI YATR 9 cut(s) 41, 70, 166, 176, 210, 247, 249, 316, 456
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 3 cut(s) 39, 68, 174
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 2 cut(s) 315, 348
FokI GGATG 4 cut(s) 420, 424, 459, 476
FspBI CTAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 236
Hin1II CATG 3 cut(s) 43, 72, 178
HinfI GANTC 2 cut(s) 113, 257
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 3 cut(s) 316, 349, 497
Hpy188I TCNGA 4 cut(s) 112, 143, 271, 333
Hpy188III TCNNGA 3 cut(s) 117, 377, 392
Hpy8I GTNNAC 3 cut(s) 316, 349, 497
HpyAV CCTTC 2 cut(s) 276, 328
HpyCH4III ACNGT 2 cut(s) 205, 313
HpyCH4IV ACGT 2 cut(s) 355, 385
HpyCH4V TGCA 7 cut(s) 50, 68, 78, 125, 245, 326, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 242
HpyF3I CTNAG 2 cut(s) 140, 270
HpySE526I ACGT 2 cut(s) 355, 385
Hsp92II CATG 3 cut(s) 43, 72, 178
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 429
LpnPI CCDG 5 cut(s) 9, 136, 355, 362, 410
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 355, 385
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 3 cut(s) 380, 392, 481
MfeI CAATTG 2 cut(s) 63, 185
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 217, 499
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 3 cut(s) 63, 185, 292
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 77, 311
MnlI CCTC 3 cut(s) 93, 118, 121
Mox20I TGGCCA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 44, 489
MslI CAYNNNNRTG 1 cut(s) 73
Msp20I TGGCCA 1 cut(s) 236
MunI CAATTG 2 cut(s) 63, 185
MwoI GCNNNNNNNGC 2 cut(s) 131, 242
NdeI CATATG 1 cut(s) 247
NdeII GATC 1 cut(s) 55
NlaIII CATG 3 cut(s) 43, 72, 178
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 1 cut(s) 43
PciI ACATGT 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 153
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PscI ACATGT 1 cut(s) 39
PsiI TTATAA 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 2 cut(s) 44, 489
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 2 cut(s) 217, 499
SetI ASST 7 cut(s) 28, 132, 268, 358, 388, 434, 504
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 3 cut(s) 63, 185, 292
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 2 cut(s) 205, 313
TaiI ACGT 2 cut(s) 358, 388
TasI AATT 3 cut(s) 63, 185, 292
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 44, 489
Tru9I TTAA 2 cut(s) 44, 489
TscAI CASTG 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 495
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 315, 348
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.