Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007714

Physical Location & Seq

Genomic Coordinates Forward (+)

28562770 .. 28564959

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1197700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAATTTCGATCACTTGCCTGAAGACTGCTTCGCGCACATTTTATCGTTCACGTCTCCGGGCGACGCATGTCGTTCCTCGTTAGTTTCATCGTCCTTTCGGGCCACGGGGGATGCCGATAGTGTGTGGCGGAAATTCTTGCCGTCAGACCACAAACAGATTCTATCCAGATTTGTGAGTCCCATAGCTTATTCATCTAGCAAAGATTTGTTTATGAAGTTATGCAGTCCAAACCTAATCGACGGTGGTGATAAGATGTTCTTCGTAGAGAAATCAACAGGTAAAAAATGCTACATGTTAAGTGCAAGGGACCTTTCAATTTCATGGGGCAGTCATCCTCTGTACTGGACCTGGAGACCTTGTCTTCAATCAAGATTTGCAGAGGTGGCTGAGCTTAGAACAATTTGGTGGCTGGAAATATGTGGCACGACAAATACTCAAATGCTATCACAAAAAACTGTCTATGGGGCCTATCTTATTATAAAGATAGCCAATCGTGCTTACGGGTTAGACACTTTGCCTTCTGAGGTTTCACTTGAAGTTGGTAGTTATAAATCACAAGGTTCAATTTACTTGAGCAAACGCAATGATATAAAAAGTGGGAAGCAAGCCTCATCAGAACACGAACATTTTCCGAAGGTAGTAAGAGCTTCGAGGTCGAGGGTTCTCGACGAAGATCGCGGCGGCAGCAAGCGCGGGGATGGATGGATGGAGGTTGAAATAGGAAGCTTCTACAATGGTGAGTGTGATGAGAAGGATGTAAGGATGAGCCTAAGAGAAGTGAAGGGTGTGCATCTTAAGGCTGGACTTATTGTTGAGGGAATTGAGCTTAGGCCTAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

8.59

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 46	2.9e-07	F-box-like
F-box	PF00646	3 - 44	1.5e-06	F-box domain
PP2	PF14299	95 - 279	9.7e-52	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09155 AT1G56240 AT1G56250
fragaria_vesca	FvH4_6g06890 FvH4_6g06890
malus_domestica	MD04G1197700.v1.1
prunus_persica	Prupe.6G318100_v2.0.a1 Prupe.6G318100_v2.0.a1
pyrus_communis	pycom04g17500
rosa_chinensis	RchiOBHm_Chr3g0456421
rosa_laevigata	RLG00000025306
rosa_multiflora	Rmu_sc0002607.1_g000018 Rmu_sc0010747.1_g000009 Rmu_sc0020202.1_g000004
rosa_roxburghii	Rroxscaffold_6G00422750
rosa_rugosa	Rorug03G0012800
rosa_samantha	Rh3AG073300 Rh3AG073400 Rh3BG075200 Rh3CG074800 Rh3DG076600 Rh5DG534700 Rh5DG534800
rosa_wichuraiana	Rw3G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	482, 552
AccII	CGCG	3 cut(s)	35, 681, 696
AciI	CCGC	4 cut(s)	130, 681, 684, 696
AcsI	RAATTY	2 cut(s)	4, 134
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	344
AflII	CTTAAG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	5 cut(s)	318, 368, 539, 567, 719
AjiI	CACGTC	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	5 cut(s)	188, 394, 650, 729, 829
AluI	AGCT	5 cut(s)	188, 394, 650, 729, 829
Alw26I	GTCTC	2 cut(s)	60, 349
AoxI	GGCC	3 cut(s)	102, 468, 833
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	2 cut(s)	4, 134
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	37, 696
AspS9I	GGNCC	4 cut(s)	102, 310, 348, 468
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	260, 752
AvaII	GGWCC	2 cut(s)	310, 348
BbsI	GAAGAC	2 cut(s)	30, 356
BbvI	GCAGC	1 cut(s)	699
BccI	CCATC	3 cut(s)	695, 699, 703
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	60, 349
BfaI	CTAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	797
BisI	GCNGC	3 cut(s)	682, 685, 688
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	683, 686, 689
Bme1390I	CCNGG	2 cut(s)	60, 352
Bme18I	GGWCC	2 cut(s)	310, 348
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	4 cut(s)	102, 310, 348, 468
BmiI	GGNNCC	2 cut(s)	311, 469
BmrFI	CCNGG	2 cut(s)	60, 352
BmsI	GCATC	2 cut(s)	103, 802
BoxI	GACNNNNGTC	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	30, 356
BpmI	CTGGAG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	830
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	595
BpuMI	CCSGG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bse1I	ACTGG	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	7 cut(s)	118, 334, 706, 710, 714, 763, 771
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	2 cut(s)	381, 516
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	699
Bsh1236I	CGCG	3 cut(s)	35, 681, 696
BshFI	GGCC	3 cut(s)	104, 470, 835
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	2 cut(s)	165, 323
BsmAI	GTCTC	2 cut(s)	60, 349
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	2 cut(s)	165, 323
BsnI	GGCC	3 cut(s)	104, 470, 835
Bso31I	GGTCTC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	10, 676
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	4 cut(s)	130, 681, 684, 696
BspANI	GGCC	3 cut(s)	104, 470, 835
BspCNI	CTCAG	2 cut(s)	382, 517
BspFNI	CGCG	3 cut(s)	35, 681, 696
BspLI	GGNNCC	2 cut(s)	311, 469
BspTI	CTTAAG	1 cut(s)	797
BspTNI	GGTCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	10, 676
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	245, 460
BstAFI	CTTAAG	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	609, 692
BstDEI	CTNAG	5 cut(s)	390, 395, 525, 773, 830
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	7 cut(s)	118, 334, 706, 710, 714, 763, 771
BstFNI	CGCG	3 cut(s)	35, 681, 696
BstHHI	GCGC	2 cut(s)	37, 696
BstKTI	GATC	2 cut(s)	13, 679
BstMAI	GTCTC	2 cut(s)	60, 349
BstMBI	GATC	2 cut(s)	10, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 497, 687, 693
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	2 cut(s)	72, 298
BstPAI	GACNNNNGTC	1 cut(s)	69
BstSCI	CCNGG	2 cut(s)	58, 350
BstUI	CGCG	3 cut(s)	35, 681, 696
BstV1I	GCAGC	1 cut(s)	699
BstV2I	GAAGAC	2 cut(s)	30, 356
BsuRI	GGCC	3 cut(s)	104, 470, 835
BtgI	CCRYGG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	7 cut(s)	118, 334, 706, 710, 714, 763, 771
Cac8I	GCNNGC	2 cut(s)	609, 692
CfoI	GCGC	2 cut(s)	37, 696
Cfr13I	GGNCC	4 cut(s)	102, 310, 348, 468
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	3 cut(s)	69, 295, 324
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	390, 395, 525, 773, 830
DpnI	GATC	2 cut(s)	12, 678
DpnII	GATC	2 cut(s)	10, 676
EciI	GGCGGA	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	835
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	310, 348
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	310, 468
EcoRII	CCWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	3 cut(s)	72, 298, 327
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	2 cut(s)	165, 323
FatI	CATG	3 cut(s)	68, 294, 323
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	3 cut(s)	682, 685, 688
FokI	GGATG	7 cut(s)	125, 321, 713, 717, 721, 770, 778
Fsp4HI	GCNGC	3 cut(s)	682, 685, 688
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	36, 695
GluI	GCNGC	3 cut(s)	682, 685, 688
GsuI	CTGGAG	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	104, 470, 835
HapII	CCGG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	37, 696
Hin1II	CATG	3 cut(s)	72, 298, 327
Hin6I	GCGC	2 cut(s)	35, 694
HinP1I	GCGC	2 cut(s)	35, 694
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	2 cut(s)	160, 178
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	260, 752
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	4 cut(s)	148, 526, 619, 636
Hpy188III	TCNNGA	3 cut(s)	168, 372, 668
Hpy8I	GTNNAC	1 cut(s)	51
Hpy99I	CGWCG	3 cut(s)	68, 245, 674
HpyAV	CCTTC	4 cut(s)	531, 631, 748, 778
HpyCH4III	ACNGT	2 cut(s)	245, 460
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	4 cut(s)	225, 305, 380, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 497, 687, 693
HpyF3I	CTNAG	5 cut(s)	390, 395, 525, 773, 830
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	72, 298, 327
HspAI	GCGC	2 cut(s)	35, 694
Kzo9I	GATC	2 cut(s)	10, 676
LpnPI	CCDG	9 cut(s)	33, 72, 181, 264, 331, 337, 364, 398, 789
Lsp1109I	GCAGC	1 cut(s)	699
LweI	GCATC	2 cut(s)	103, 802
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	1 cut(s)	53
MalI	GATC	2 cut(s)	12, 678
MboI	GATC	2 cut(s)	10, 676
MboII	GAAGA	4 cut(s)	35, 253, 356, 686
MluCI	AATT	6 cut(s)	4, 134, 318, 402, 567, 822
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	88, 348, 376, 520, 622, 648, 654, 706, 811
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	2 cut(s)	299, 798
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	60, 352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	3 cut(s)	35, 681, 696
MwoI	GCNNNNNNNGC	4 cut(s)	386, 497, 687, 693
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	10, 676
NlaIII	CATG	3 cut(s)	72, 298, 327
NlaIV	GGNNCC	2 cut(s)	311, 469
NspI	RCATGY	2 cut(s)	72, 298
PceI	AGGCCT	1 cut(s)	835
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	683, 686, 689
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	310
PscI	ACATGT	1 cut(s)	294
PshAI	GACNNNNGTC	1 cut(s)	69
PsiI	TTATAA	2 cut(s)	482, 552
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	311, 469
PspPI	GGNCC	4 cut(s)	102, 310, 348, 468
PspPPI	RGGWCCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	299, 798
SatI	GCNGC	3 cut(s)	682, 685, 688
Sau3AI	GATC	2 cut(s)	10, 676
Sau96I	GGNCC	4 cut(s)	102, 310, 348, 468
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	60, 352
SfaNI	GCATC	2 cut(s)	103, 802
SinI	GGWCC	2 cut(s)	310, 348
SmlI	CTYRAG	2 cut(s)	574, 797
SmoI	CTYRAG	2 cut(s)	574, 797
Sse9I	AATT	6 cut(s)	4, 134, 318, 402, 567, 822
SseBI	AGGCCT	1 cut(s)	835
SsiI	CCGC	4 cut(s)	130, 681, 684, 696
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	835
StyD4I	CCNGG	2 cut(s)	58, 350
TaaI	ACNGT	2 cut(s)	245, 460
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	5 cut(s)	9, 240, 653, 659, 669
TasI	AATT	6 cut(s)	4, 134, 318, 402, 567, 822
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	2 cut(s)	684, 687
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	299, 798
Tru9I	TTAA	2 cut(s)	299, 798
TseI	GCWGC	1 cut(s)	687
TspDTI	ATGAA	5 cut(s)	17, 78, 183, 230, 312
Tth111I	GACNNNGTC	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	797
VpaK11BI	GGWCC	2 cut(s)	310, 348
XapI	RAATTY	2 cut(s)	4, 134
XceI	RCATGY	2 cut(s)	72, 298
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.