Rmu_sc0010747.1_g000009

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010747.1
OG0007714
Physical Location & Seq
Reverse (-)
24644 .. 25063
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010747.1_g000009.1.cds

Sequence Viewer

Length: 420 bp
atgcaatatagggagcatgtcccaccctcaatcccgaaggagaatggtccaccacactctaggccaaaaacagtttatagtgctcgtcttgttatcaagttggccaatcgtgcatatggtttggactcattaccttctgagatttcacttgaagttggcaattacaaatcacaaggcactgtatacttgagtgcaaatcggaagacaacagaagtagacgaacgtgtgagaccaatcagggttctggaagaacgtcttcgtgagcgaacagatggatggatggagattgaactggggagcttttacaatgatggatgttattataacaaggatgtgaagatgagcctaaaagaagttaagggtgcacacctaaaaggtggccttattgttgagggaattgagattaggccaaaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

139

Amino Acids

15.87

Weight (kDa)

9.16

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AccI GTMKAC 2 cut(s) 183, 216
AcoI YGGCCR 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 2 cut(s) 152, 290
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw21I GWGCWC 2 cut(s) 85, 367
Alw26I GTCTC 1 cut(s) 223
Alw44I GTGCAC 1 cut(s) 363
AoxI GGCC 4 cut(s) 62, 102, 379, 407
ApaLI GTGCAC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 209, 248
Bbv12I GWGCWC 2 cut(s) 85, 367
BccI CCATC 4 cut(s) 266, 270, 274, 305
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 209, 248
BpuEI CTTGAG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 297
BseGI GGATG 4 cut(s) 281, 285, 320, 337
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 367
BshFI GGCC 4 cut(s) 64, 104, 381, 409
BsiHKAI GWGCWC 2 cut(s) 85, 367
BslFI GGGAC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 4 cut(s) 64, 104, 381, 409
Bso31I GGTCTC 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 85, 367
BspANI GGCC 4 cut(s) 64, 104, 381, 409
BspCNI CTCAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 297
BssNAI GTATAC 1 cut(s) 184
Bst1107I GTATAC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 73, 181
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 281, 285, 320, 337
BstMAI GTCTC 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 367
BstV2I GAAGAC 2 cut(s) 209, 248
BstZ17I GTATAC 1 cut(s) 184
BsuRI GGCC 4 cut(s) 64, 104, 381, 409
BtsCI GGATG 4 cut(s) 281, 285, 320, 337
BtsIMutI CAGTG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 1 cut(s) 17
CviJI RGCY 6 cut(s) 64, 104, 300, 345, 381, 409
CviKI_1 RGCY 6 cut(s) 64, 104, 300, 345, 381, 409
DdeI CTNAG 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 47
FaeI CATG 1 cut(s) 20
FaiI YATR 7 cut(s) 9, 18, 78, 115, 117, 184, 324
FalI AAGNNNNNCTT 4 cut(s) 240, 272, 366, 398
FaqI GGGAC 1 cut(s) 5
FatI CATG 1 cut(s) 16
FauNDI CATATG 1 cut(s) 115
FblI GTMKAC 2 cut(s) 183, 216
FokI GGATG 4 cut(s) 288, 292, 327, 344
FspBI CTAG 1 cut(s) 60
HaeIII GGCC 4 cut(s) 64, 104, 381, 409
Hin1II CATG 1 cut(s) 20
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 4 cut(s) 50, 184, 217, 365
Hpy188I TCNGA 2 cut(s) 139, 201
Hpy188III TCNNGA 3 cut(s) 34, 245, 260
Hpy8I GTNNAC 4 cut(s) 50, 184, 217, 365
HpyAV CCTTC 2 cut(s) 31, 144
HpyCH4III ACNGT 2 cut(s) 73, 181
HpyCH4IV ACGT 2 cut(s) 223, 253
HpyCH4V TGCA 4 cut(s) 4, 113, 194, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 2 cut(s) 223, 253
Hsp92II CATG 1 cut(s) 20
LmnI GCTCC 2 cut(s) 13, 297
LpnPI CCDG 3 cut(s) 223, 230, 278
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 223, 253
MboII GAAGA 4 cut(s) 214, 248, 260, 349
MhlI GDGCHC 2 cut(s) 85, 367
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 160, 396, 415
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 2 cut(s) 37, 385
Mox20I TGGCCA 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 104
MseI TTAA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeI CATATG 1 cut(s) 115
NlaIII CATG 1 cut(s) 20
NspI RCATGY 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 255
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 324
PspPI GGNCC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 357
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 2 cut(s) 85, 367
SetI ASST 6 cut(s) 136, 226, 256, 302, 372, 379
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 3 cut(s) 160, 396, 415
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 73, 181
TaiI ACGT 2 cut(s) 226, 256
TasI AATT 3 cut(s) 160, 396, 415
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 184
TspRI CASTG 1 cut(s) 184
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 1 cut(s) 20
XmiI GTMKAC 2 cut(s) 183, 216
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.