AT1G56240

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007714
Physical Location & Seq
Reverse (-)
21056099 .. 21057577
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56240.1

Sequence Viewer

Length: 855 bp
ATGATGATGTTACCTGAAGCATGCGTAGCCAACATCCTTGCCTTCACATCTCCAGCCGATGCATTTTCGTCATCGGAAGTCTCTTCGGTGTTCCGGTTAGCGGGAGACTCCGATTTTGTATGGGAAAAGTTTCTACCGTCCCATTACAAAAGCCTCATCTCTCAATCTACTGATCACCATCGGATTTTTTCGTCCAAAAAGGAGATTTATCGATGTTTATGTGACTCTCTTCTCATCGATAATGCTCGAAAGCTGTTCAAGATCAATAAATTTTCCGGGAAAATTTCCTACATTTTATCAGCAAGAGATATTTCCATAACTTATAGTGACCATGCATCGTACTGCTCTTGGAGCAATGTCTCAGATTCTAGATTTTCAGAGTCAGCTGAACTTATAACAACAGACCGATTAGAAATCAAGGGTAAAATTCAAACCACAGTTTTATCACCAAACACAAAATATGGAGCATATCTCATCATGAAAGTAACTAACGGTGCTTACGGACTAGACCTAGTTCCGGCGGAGACATCGGTTAAATCTAAGAATGGTCAAAATAATAAGAACACAACTTATCTATGTTGCTTGGATGAGAAGAAACAGCAAATGAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGACTGTGGAGGCCGTAGGCGGAGACGGGAAAAGGAGGGAGCCGAAAGCTAGAGACGACGGGTGGTTGGAGATTGAGTTAGGAGAGTTTGTGACACGAGAAGGAGAAGATGATGAAGTCAATATGAGTCTTACGGAGGTGAAAGGATATCAACTGAAAGGTGGAATTGTGATTGATGGTATTGAAGTGAGGCCTATACCTCTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0030246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

284

Amino Acids

31.94

Weight (kDa)

6.47

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 94 - 280 2.7e-47 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AciI CCGC 4 cut(s) 101, 521, 610, 666
AcsI RAATTY 3 cut(s) 269, 282, 426
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 100, 517
AgsI TTSAA 3 cut(s) 259, 431, 830
AluBI AGCT 3 cut(s) 253, 386, 695
AluI AGCT 3 cut(s) 253, 386, 695
Alw26I GTCTC 6 cut(s) 85, 99, 364, 518, 663, 693
AoxI GGCC 2 cut(s) 657, 836
ApoI RAATTY 3 cut(s) 269, 282, 426
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 3 cut(s) 167, 438, 796
BauI CACGAG 1 cut(s) 741
BccI CCATC 2 cut(s) 186, 815
BceAI ACGGC 1 cut(s) 644
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 6 cut(s) 85, 99, 364, 518, 663, 693
BfaI CTAG 4 cut(s) 369, 506, 512, 696
BisI GCNGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 612
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 626, 687
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 49, 344
BplI GAGNNNNNCTC 2 cut(s) 456, 488
BpmI CTGGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 2 cut(s) 211, 237
BsaBI GATNNNNATC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 93
BsaXI ACNNNNNCTCC 4 cut(s) 707, 720, 737, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 517
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 177
BseCI ATCGAT 2 cut(s) 211, 237
BseGI GGATG 2 cut(s) 33, 592
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 100, 517
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 375
BshFI GGCC 2 cut(s) 659, 838
BshVI ATCGAT 2 cut(s) 211, 237
BsiSI CCGG 3 cut(s) 94, 276, 518
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 100, 517
BsmAI GTCTC 6 cut(s) 85, 99, 364, 518, 663, 693
BsmBI CGTCTC 2 cut(s) 663, 693
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 2 cut(s) 659, 838
Bsp143I GATC 2 cut(s) 172, 261
BspACI CCGC 4 cut(s) 101, 521, 610, 666
BspANI GGCC 2 cut(s) 659, 838
BspCNI CTCAG 1 cut(s) 374
BspDI ATCGAT 2 cut(s) 211, 237
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 2 cut(s) 626, 687
BspQI GCTCTTC 1 cut(s) 627
BsrDI GCAATG 1 cut(s) 361
BssMI GATC 2 cut(s) 172, 261
BssSI CACGAG 1 cut(s) 741
Bst2BI CACGAG 1 cut(s) 741
Bst4CI ACNGT 4 cut(s) 138, 439, 494, 652
Bst6I CTCTTC 3 cut(s) 88, 234, 627
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 361, 540
BstF5I GGATG 2 cut(s) 33, 592
BstKTI GATC 2 cut(s) 175, 264
BstMAI GTCTC 6 cut(s) 85, 99, 364, 518, 663, 693
BstMBI GATC 2 cut(s) 172, 261
BstMWI GCNNNNNNNGC 3 cut(s) 26, 351, 607
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 275
Bsu15I ATCGAT 2 cut(s) 211, 237
BsuRI GGCC 2 cut(s) 659, 838
BsuTUI ATCGAT 2 cut(s) 211, 237
BtgZI GCGATG 1 cut(s) 659
BtsCI GGATG 2 cut(s) 33, 592
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 477
ClaI ATCGAT 2 cut(s) 211, 237
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 21, 332, 478
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 361, 540
DpnI GATC 2 cut(s) 174, 263
DpnII GATC 2 cut(s) 172, 261
Eam1104I CTCTTC 3 cut(s) 88, 234, 627
EarI CTCTTC 3 cut(s) 88, 234, 627
EciI GGCGGA 2 cut(s) 536, 681
Eco147I AGGCCT 1 cut(s) 838
Eco32I GATATC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 794
EcoT22I ATGCAT 2 cut(s) 64, 337
Esp3I CGTCTC 2 cut(s) 663, 693
FaeI CATG 3 cut(s) 24, 335, 481
FaqI GGGAC 1 cut(s) 124
FatI CATG 3 cut(s) 20, 331, 477
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 611
FokI GGATG 2 cut(s) 20, 599
Fsp4HI GCNGC 1 cut(s) 611
FspBI CTAG 4 cut(s) 369, 506, 512, 696
GluI GCNGC 1 cut(s) 611
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 2 cut(s) 659, 838
HapII CCGG 3 cut(s) 94, 276, 518
Hin1II CATG 3 cut(s) 24, 335, 481
HinfI GANTC 5 cut(s) 107, 224, 365, 380, 772
HpaII CCGG 3 cut(s) 94, 276, 518
HphI GGTGA 3 cut(s) 167, 438, 796
Hpy188I TCNGA 6 cut(s) 76, 112, 183, 364, 379, 849
Hpy188III TCNNGA 3 cut(s) 259, 369, 478
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 2 cut(s) 52, 740
HpyCH4III ACNGT 4 cut(s) 138, 439, 494, 652
HpyCH4V TGCA 2 cut(s) 62, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 351, 607
HpyF3I CTNAG 2 cut(s) 361, 540
Hsp92II CATG 3 cut(s) 24, 335, 481
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 261
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 3 cut(s) 351, 464, 685
LpnPI CCDG 5 cut(s) 27, 66, 107, 289, 531
LweI GCATC 2 cut(s) 49, 344
MaeI CTAG 4 cut(s) 369, 506, 512, 696
MaeIII GTNAC 5 cut(s) 9, 221, 326, 484, 736
MalI GATC 2 cut(s) 174, 263
MboI GATC 2 cut(s) 172, 261
MboII GAAGA 5 cut(s) 75, 221, 604, 644, 764
MluCI AATT 4 cut(s) 269, 282, 426, 810
MlyI GAGTC 4 cut(s) 101, 218, 389, 781
MmeI TCCRAC 1 cut(s) 693
MnlI CCTC 6 cut(s) 164, 649, 675, 775, 828, 855
Mph1103I ATGCAT 2 cut(s) 64, 337
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 94, 276, 518
MspR9I CCNGG 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 26, 351, 607
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 172, 261
NlaIII CATG 3 cut(s) 24, 335, 481
NlaIV GGNNCC 2 cut(s) 626, 687
NmuCI GTSAC 3 cut(s) 221, 326, 736
NsiI ATGCAT 2 cut(s) 64, 337
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PagI TCATGA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 838
PciSI GCTCTTC 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 4 cut(s) 101, 218, 388, 780
PpsI GAGTC 4 cut(s) 101, 218, 388, 780
PsiI TTATAA 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 626, 687
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 2 cut(s) 172, 261
SchI GAGTC 4 cut(s) 101, 218, 389, 781
ScrFI CCNGG 1 cut(s) 277
SetI ASST 8 cut(s) 16, 255, 388, 513, 697, 786, 808, 847
SfaNI GCATC 2 cut(s) 49, 344
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 269, 282, 426, 810
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 4 cut(s) 101, 521, 610, 666
SspMI CTAG 4 cut(s) 369, 506, 512, 696
StuI AGGCCT 1 cut(s) 838
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 4 cut(s) 138, 439, 494, 652
TaqI TCGA 3 cut(s) 211, 237, 247
TaqII GACCGA 1 cut(s) 420
TasI AATT 4 cut(s) 269, 282, 426, 810
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 3 cut(s) 221, 326, 736
Tsp45I GTSAC 3 cut(s) 221, 326, 736
TspDTI ATGAA 3 cut(s) 494, 620, 774
TspGWI ACGGA 2 cut(s) 516, 794
XapI RAATTY 3 cut(s) 269, 282, 426
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 4 cut(s) 369, 506, 512, 696
Zsp2I ATGCAT 2 cut(s) 64, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.