FvH4_6g06890

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007714
Physical Location & Seq
Reverse (-)
4162590 .. 4166964
4375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06890.t2

Sequence Viewer

Length: 816 bp
ATGAGCTTGGAGGATTTGCCACAAGACTGCTTCCAGCTGATTTTATCACTGACATCTCCCAGAGATGCAAGCCGTTCCTCGTTGGTCTCATTGTCGATTCGTGCCATGGCCGATAGCGATAGCGTGTGGGAGAAGTTTCTGCCGGAGGACTATGCAGAAATTCTGTCCAGATTAGTCACTCCGATACCTTATTCATCCAACAAGGACTTGTTCATCAAGCTCTGCGATCCTAATCTAATCGATGGTGGTAAAAAGATGTTCTCAATAGAGAAATCAACAGGTAAAAAATGTTACATATTAAGTGCAAGGGATCTTTCAATTACATGGGCGTGCAATCCTCTCTATTGGTGTTGGAAGCGTTCGCTGCCTGCCTCCGAATCAAGATTTGCAGAGGTTGCTGAACTAAGAACAATCTGGTGGCTAGAAATATGTGGCACCATGAAAGCTCAAATGCTATCACCAAACACAGTTTATGGTGCCTATCTTGTTACCAAATTGGCCAATCGCGCATATGGTTTGGACTCATTACCTTCTGCGGTTTCACTTGAAGTAGGCGATTTCAAATCACAAGGCTCTGTATACTTGAGTATAAATCAGAAGGTAACAAAAGTAGATGAAAATGTGAGACCAATTAGGGTTATGGAAGAACGTCTTCGTGAGCGAAAAGATGGATGGATGGAGATTGAGCTGGGGAGCTTCTACAATGATGGTTGTTATTGTAACAAGGATGTGAAAATGAGCTTAAAAGAAGTTAGGGGTGCACATCTTAAAGGTGGCCTAATTGTTGGGGGAATTGAGATTAGGCCAAAACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

272

Amino Acids

30.63

Weight (kDa)

8.04

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 120 - 294 6e-51 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 434, 476
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 507
AciI CCGC 1 cut(s) 536
AclWI GGATC 2 cut(s) 221, 318
AcoI YGGCCR 2 cut(s) 108, 498
AcsI RAATTY 1 cut(s) 159
AgsI TTSAA 3 cut(s) 318, 548, 562
AluBI AGCT 7 cut(s) 6, 37, 220, 446, 688, 696, 741
AluI AGCT 7 cut(s) 6, 37, 220, 446, 688, 696, 741
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 2 cut(s) 91, 619
Alw44I GTGCAC 1 cut(s) 759
AlwI GGATC 2 cut(s) 221, 318
AoxI GGCC 4 cut(s) 108, 498, 775, 803
ApaLI GTGCAC 1 cut(s) 759
ApeKI GCWGC 1 cut(s) 364
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 450
BaeGI GKGCMC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 500
BanI GGYRCC 2 cut(s) 434, 476
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 1 cut(s) 351
BccI CCATC 5 cut(s) 236, 662, 666, 670, 701
BceAI ACGGC 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 91, 619
BfaI CTAG 1 cut(s) 422
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
BmiI GGNNCC 2 cut(s) 436, 478
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 604
Bsa29I ATCGAT 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 91, 619
BsaJI CCNNGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 4 cut(s) 194, 677, 681, 733
BseJI GATNNNNATC 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 763
BseXI GCAGC 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 4 cut(s) 110, 500, 777, 805
BshNI GGYRCC 2 cut(s) 434, 476
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 763
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 91, 619
BsnI GGCC 4 cut(s) 110, 500, 777, 805
Bso31I GGTCTC 2 cut(s) 91, 619
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 2 cut(s) 226, 310
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 536
BspANI GGCC 4 cut(s) 110, 500, 777, 805
BspDI ATCGAT 1 cut(s) 240
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 436, 478
BspPI GGATC 2 cut(s) 221, 318
BspT107I GGYRCC 2 cut(s) 434, 476
BspTNI GGTCTC 2 cut(s) 91, 619
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 226, 310
BssNAI GTATAC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 105
Bst1107I GTATAC 1 cut(s) 580
Bst4CI ACNGT 1 cut(s) 469
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 3 cut(s) 70, 331, 369
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 194, 677, 681, 733
BstFNI CGCG 1 cut(s) 507
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 229, 313
BstMAI GTCTC 2 cut(s) 91, 619
BstMBI GATC 2 cut(s) 226, 310
BstMWI GCNNNNNNNGC 3 cut(s) 364, 395, 506
BstSLI GKGCMC 1 cut(s) 763
BstUI CGCG 1 cut(s) 507
BstV1I GCAGC 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 4 cut(s) 110, 500, 777, 805
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 4 cut(s) 194, 677, 681, 733
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 3 cut(s) 70, 331, 369
CfoI GCGC 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 240
CviAII CATG 3 cut(s) 106, 324, 439
DdeI CTNAG 1 cut(s) 404
DpnI GATC 2 cut(s) 228, 312
DpnII GATC 2 cut(s) 226, 310
EaeI YGGCCR 2 cut(s) 108, 498
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 91, 619
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 3 cut(s) 109, 327, 442
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 3 cut(s) 105, 323, 438
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 4 cut(s) 181, 684, 688, 740
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 508
GluI GCNGC 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 692
HaeIII GGCC 4 cut(s) 110, 500, 777, 805
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 509
Hin1II CATG 3 cut(s) 109, 327, 442
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 3 cut(s) 97, 377, 521
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 580, 761
Hpy188I TCNGA 3 cut(s) 183, 376, 597
Hpy188III TCNNGA 3 cut(s) 168, 381, 656
Hpy8I GTNNAC 2 cut(s) 580, 761
HpyAV CCTTC 2 cut(s) 540, 592
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 6 cut(s) 68, 155, 305, 333, 389, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 395, 506
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 3 cut(s) 109, 327, 442
HspAI GCGC 1 cut(s) 507
Kzo9I GATC 2 cut(s) 226, 310
LmnI GCTCC 1 cut(s) 693
LpnPI CCDG 8 cut(s) 47, 73, 156, 181, 264, 381, 400, 674
Lsp1109I GCAGC 1 cut(s) 351
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 5 cut(s) 175, 290, 487, 601, 719
MalI GATC 2 cut(s) 228, 312
MboI GATC 2 cut(s) 226, 310
MboII GAAGA 2 cut(s) 644, 656
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 763
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 6 cut(s) 159, 318, 494, 630, 780, 792
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 222, 332
MnlI CCTC 6 cut(s) 4, 88, 139, 348, 382, 385
Mox20I TGGCCA 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 651
MscI TGGCCA 1 cut(s) 500
MseI TTAA 3 cut(s) 299, 743, 768
MslI CAYNNNNRTG 1 cut(s) 328
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 364, 395, 506
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 511
NdeII GATC 2 cut(s) 226, 310
NlaIII CATG 3 cut(s) 109, 327, 442
NlaIV GGNNCC 2 cut(s) 436, 478
NmuCI GTSAC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 97, 377
PkrI GCNGC 1 cut(s) 366
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 436, 478
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 328
SaqAI TTAA 3 cut(s) 299, 743, 768
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 2 cut(s) 226, 310
SchI GAGTC 1 cut(s) 515
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 6 cut(s) 159, 318, 494, 630, 780, 792
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 652
TaqI TCGA 2 cut(s) 95, 240
TasI AATT 6 cut(s) 159, 318, 494, 630, 780, 792
TfiI GAWTC 2 cut(s) 97, 377
Tru1I TTAA 3 cut(s) 299, 743, 768
Tru9I TTAA 3 cut(s) 299, 743, 768
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 183, 202, 455, 630
TspRI CASTG 1 cut(s) 54
VneI GTGCAC 1 cut(s) 759
XapI RAATTY 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.