Prupe.6G318100_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007714
Physical Location & Seq
Forward (+)
28251608 .. 28254648
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G318100.2

Sequence Viewer

Length: 858 bp
ATGAATTTGGATCACTTGCCCGAAGACTGTTTTGCGCATATTTTATCATTTACATCTCCCGGAGATGCATGTCATTGTTCATTAGTTTCGTGGTCGTTTCGCACCATGGCTGATTTGGATAGCGTGTGGGAGAAATTTTTGCCATCCGACCATGCTGAAATTCTATCCAGATTAGTATGTCCAATAACTTATTCCTCTAACAAAGAGTTGTTTATCAAGTTATGCAGGCCAAATCTAATTGATGGTGGTAAGAAGATGTTCTCAATAGAGAAATCGACAAGTAAAAAATGTTACATGTTAAGTGCAAGGGATCTTTCAATTACATGGGCATGCAATCCTCTGTATTGGACCTGGAGACCTCTTGTTGAATCAAGATTTGCAGAGGTTGCTGAACTCAGAACCATTTGGTGGCTGGAAATATGTGGCACAATGAACACTCAAATGCTGTCACCAAAAACAGTCTACGGGGCCTATCTTATTGCCAAGTTGGCTGATCGTGCGTATGGCTTAGACTCTTTGCCATCTGAGGTTTCACTTGAAGTTGGTAACTTCAAATCACAAGGTACAGTTTACTTGAGCACACGCCATGATCAAAGTAGGAAGCAAGCTGCTGCTGCTGATTTAGAACATGAACATTTTTCGAAGCGGATTGGAGCTTCGAGACGAAGGGTTTTAGAAGGAGATCATGGAGGAGGTCTCTGTGAGCGCAAAGATGGCTGGATGGAAGTAGAAATAGGGAGCTTTTACAATGAAGGCTGTGCTAATAATGATGTAAAGATGAGCGTAAAAGAAGTGAAGGGTGCCCATCTTAAAGGTGGACTTATTGTTGAGGGAATTGAGATTAGGCCAAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

286

Amino Acids

32.12

Weight (kDa)

6.75

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 408
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 646
AclWI GGATC 2 cut(s) 18, 318
AcsI RAATTY 4 cut(s) 4, 134, 159, 852
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 408
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 4 cut(s) 318, 368, 539, 553
AjnI CCWGG 1 cut(s) 350
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 3 cut(s) 608, 656, 741
AluI AGCT 3 cut(s) 608, 656, 741
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 3 cut(s) 349, 655, 701
AlwI GGATC 2 cut(s) 18, 318
AoxI GGCC 3 cut(s) 227, 468, 845
ApeKI GCWGC 3 cut(s) 608, 611, 614
ApoI RAATTY 4 cut(s) 4, 134, 159, 852
Asp700I GAANNNNTTC 1 cut(s) 257
AspLEI GCGC 2 cut(s) 37, 708
AspS9I GGNCC 2 cut(s) 348, 468
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 441
AsuII TTCGAA 1 cut(s) 641
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 3 cut(s) 595, 598, 601
BccI CCATC 6 cut(s) 151, 236, 529, 707, 715, 813
BciT130I CCWGG 1 cut(s) 352
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 3 cut(s) 349, 655, 701
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 3 cut(s) 609, 612, 615
BlsI GCNGC 3 cut(s) 610, 613, 616
Bme1390I CCNGG 2 cut(s) 60, 352
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 2 cut(s) 348, 468
BmiI GGNNCC 2 cut(s) 469, 802
BmrFI CCNGG 2 cut(s) 60, 352
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 681, 713
BpmI CTGGAG 1 cut(s) 373
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 595
BpuMI CCSGG 1 cut(s) 60
BsaI GGTCTC 2 cut(s) 349, 701
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 143, 726
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 409, 516
BseRI GAGGAG 1 cut(s) 705
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 3 cut(s) 595, 598, 601
BshFI GGCC 3 cut(s) 229, 470, 847
BshNI GGYRCC 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 581
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 3 cut(s) 349, 655, 701
BsmBI CGTCTC 1 cut(s) 655
BsnI GGCC 3 cut(s) 229, 470, 847
Bso31I GGTCTC 2 cut(s) 349, 701
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 581, 805
Bsp143I GATC 5 cut(s) 10, 310, 493, 589, 682
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 1 cut(s) 646
BspANI GGCC 3 cut(s) 229, 470, 847
BspCNI CTCAG 2 cut(s) 408, 517
BspLI GGNNCC 2 cut(s) 469, 802
BspPI GGATC 2 cut(s) 18, 318
BspT104I TTCGAA 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 800
BspTNI GGTCTC 2 cut(s) 349, 701
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 5 cut(s) 10, 310, 493, 589, 682
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 29, 460, 568
BstAPI GCANNNNNTGC 1 cut(s) 386
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 3 cut(s) 227, 331, 606
BstDEI CTNAG 3 cut(s) 395, 508, 525
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 143, 726
BstHHI GCGC 2 cut(s) 37, 708
BstKTI GATC 5 cut(s) 13, 313, 496, 592, 685
BstMAI GTCTC 3 cut(s) 349, 655, 701
BstMBI GATC 5 cut(s) 10, 310, 493, 589, 682
BstMWI GCNNNNNNNGC 5 cut(s) 386, 488, 497, 614, 714
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 3 cut(s) 72, 298, 333
BstSCI CCNGG 2 cut(s) 58, 350
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 595, 598, 601
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 3 cut(s) 229, 470, 847
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 143, 726
Cac8I GCNNGC 3 cut(s) 227, 331, 606
CfoI GCGC 2 cut(s) 37, 708
Cfr13I GGNCC 2 cut(s) 348, 468
Csp6I GTAC 1 cut(s) 564
CviAII CATG 9 cut(s) 69, 106, 152, 295, 324, 330, 587, 629, 686
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 3 cut(s) 395, 508, 525
DpnI GATC 5 cut(s) 12, 312, 495, 591, 684
DpnII GATC 5 cut(s) 10, 310, 493, 589, 682
Eco130I CCWWGG 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 349, 701
Eco47I GGWCC 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 655
FaeI CATG 9 cut(s) 72, 109, 155, 298, 327, 333, 590, 632, 689
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FatI CATG 9 cut(s) 68, 105, 151, 294, 323, 329, 586, 628, 685
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 3 cut(s) 609, 612, 615
FokI GGATG 2 cut(s) 130, 733
Fsp4HI GCNGC 3 cut(s) 609, 612, 615
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 2 cut(s) 36, 707
GluI GCNGC 3 cut(s) 609, 612, 615
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 3 cut(s) 229, 470, 847
HapII CCGG 1 cut(s) 60
HhaI GCGC 2 cut(s) 37, 708
Hin1II CATG 9 cut(s) 72, 109, 155, 298, 327, 333, 590, 632, 689
Hin6I GCGC 2 cut(s) 35, 706
HinP1I GCGC 2 cut(s) 35, 706
HinfI GANTC 2 cut(s) 368, 512
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 3 cut(s) 463, 571, 818
Hpy188I TCNGA 3 cut(s) 148, 398, 526
Hpy188III TCNNGA 3 cut(s) 168, 372, 660
Hpy8I GTNNAC 3 cut(s) 463, 571, 818
HpyAV CCTTC 4 cut(s) 660, 671, 746, 790
HpyCH4III ACNGT 3 cut(s) 29, 460, 568
HpyCH4V TGCA 5 cut(s) 68, 225, 305, 333, 380
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 488, 497, 614, 714
HpyF3I CTNAG 3 cut(s) 395, 508, 525
Hsp92II CATG 9 cut(s) 72, 109, 155, 298, 327, 333, 590, 632, 689
HspAI GCGC 2 cut(s) 35, 706
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 5 cut(s) 10, 310, 493, 589, 682
LmnI GCTCC 2 cut(s) 653, 738
LpnPI CCDG 7 cut(s) 73, 181, 211, 337, 364, 398, 703
Lsp1109I GCAGC 3 cut(s) 595, 598, 601
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 290, 447, 545
MalI GATC 5 cut(s) 12, 312, 495, 591, 684
MboI GATC 5 cut(s) 10, 310, 493, 589, 682
MboII GAAGA 2 cut(s) 35, 265
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 581, 805
MluCI AATT 7 cut(s) 4, 134, 159, 237, 318, 834, 852
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 8 cut(s) 205, 348, 369, 376, 520, 683, 686, 823
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 299, 810, 856
MslI CAYNNNNRTG 2 cut(s) 328, 440
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 60, 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 5 cut(s) 386, 488, 497, 614, 714
NciI CCSGG 1 cut(s) 60
NcoI CCATGG 1 cut(s) 105
NdeII GATC 5 cut(s) 10, 310, 493, 589, 682
NlaIII CATG 9 cut(s) 72, 109, 155, 298, 327, 333, 590, 632, 689
NlaIV GGNNCC 2 cut(s) 469, 802
NmuCI GTSAC 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 3 cut(s) 72, 298, 333
NspV TTCGAA 1 cut(s) 641
PaeI GCATGC 1 cut(s) 333
PciI ACATGT 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 58
PkrI GCNGC 3 cut(s) 610, 613, 616
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PscI ACATGT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 469, 802
PspPI GGNCC 2 cut(s) 348, 468
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 2 cut(s) 328, 440
SaqAI TTAA 3 cut(s) 299, 810, 856
SatI GCNGC 3 cut(s) 609, 612, 615
Sau3AI GATC 5 cut(s) 10, 310, 493, 589, 682
Sau96I GGNCC 2 cut(s) 348, 468
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 60, 352
SduI GDGCHC 2 cut(s) 581, 805
SfaNI GCATC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 328, 440
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
SphI GCATGC 1 cut(s) 333
Sse9I AATT 7 cut(s) 4, 134, 159, 237, 318, 834, 852
SsiI CCGC 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 58, 350
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 29, 460, 568
TaqI TCGA 3 cut(s) 275, 641, 659
TasI AATT 7 cut(s) 4, 134, 159, 237, 318, 834, 852
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 3 cut(s) 299, 810, 856
Tru9I TTAA 3 cut(s) 299, 810, 856
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 3 cut(s) 608, 611, 614
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 5 cut(s) 17, 69, 446, 645, 765
Van91I CCANNNNNTGG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 348
XapI RAATTY 4 cut(s) 4, 134, 159, 852
XceI RCATGY 3 cut(s) 72, 298, 333
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 409, 812
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.